Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NYE42_RS12770 Genome accession   NZ_CP152036
Coordinates   2618081..2618518 (-) Length   145 a.a.
NCBI ID   WP_015417817.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2865     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2613081..2623518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE42_RS12720 (NYE42_12700) sinI 2613465..2613638 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  NYE42_RS12725 (NYE42_12705) sinR 2613672..2614007 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  NYE42_RS12730 (NYE42_12710) tasA 2614055..2614840 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  NYE42_RS12735 (NYE42_12715) sipW 2614905..2615489 (-) 585 WP_015240205.1 signal peptidase I SipW -
  NYE42_RS12740 (NYE42_12720) tapA 2615461..2616132 (-) 672 WP_095352946.1 amyloid fiber anchoring/assembly protein TapA -
  NYE42_RS12745 (NYE42_12725) - 2616391..2616720 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  NYE42_RS12750 (NYE42_12730) - 2616760..2616939 (-) 180 WP_003153093.1 YqzE family protein -
  NYE42_RS12755 (NYE42_12735) comGG 2616996..2617373 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  NYE42_RS12760 (NYE42_12740) comGF 2617374..2617874 (-) 501 WP_260854721.1 competence type IV pilus minor pilin ComGF -
  NYE42_RS12765 (NYE42_12745) comGE 2617783..2618097 (-) 315 WP_352426500.1 competence type IV pilus minor pilin ComGE -
  NYE42_RS12770 (NYE42_12750) comGD 2618081..2618518 (-) 438 WP_015417817.1 competence type IV pilus minor pilin ComGD Machinery gene
  NYE42_RS12775 (NYE42_12755) comGC 2618508..2618816 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  NYE42_RS12780 (NYE42_12760) comGB 2618821..2619858 (-) 1038 WP_342496985.1 competence type IV pilus assembly protein ComGB Machinery gene
  NYE42_RS12785 (NYE42_12765) comGA 2619845..2620915 (-) 1071 WP_342496986.1 competence type IV pilus ATPase ComGA Machinery gene
  NYE42_RS12790 (NYE42_12770) - 2621108..2622058 (-) 951 WP_015417820.1 magnesium transporter CorA family protein -
  NYE42_RS12795 (NYE42_12775) - 2622204..2623505 (+) 1302 WP_012117986.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16226.70 Da        Isoelectric Point: 10.1850

>NTDB_id=986140 NYE42_RS12770 WP_015417817.1 2618081..2618518(-) (comGD) [Bacillus sp. FSL K6-2865]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPACTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=986140 NYE42_RS12770 WP_015417817.1 2618081..2618518(-) (comGD) [Bacillus sp. FSL K6-2865]
TTGAACAATAACAGGCGGACAGAAAATGGGTTCACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGCCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCTTTTGATTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

56.164

100

0.566

Multiple sequence alignment