Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NYE42_RS02040 Genome accession   NZ_CP152036
Coordinates   434409..435362 (+) Length   317 a.a.
NCBI ID   WP_059366593.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2865     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 429409..440362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE42_RS02015 (NYE42_02010) - 429456..430889 (+) 1434 WP_165913860.1 HAMP domain-containing sensor histidine kinase -
  NYE42_RS02020 (NYE42_02015) rapC 431042..432190 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  NYE42_RS02025 (NYE42_02020) phrC 432174..432293 (+) 120 WP_265451313.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  NYE42_RS02030 (NYE42_02025) - 432441..432536 (-) 96 WP_021495118.1 YjcZ family sporulation protein -
  NYE42_RS02035 (NYE42_02030) - 432631..433995 (-) 1365 WP_095352403.1 aspartate kinase -
  NYE42_RS02040 (NYE42_02035) ceuB 434409..435362 (+) 954 WP_059366593.1 ABC transporter permease Machinery gene
  NYE42_RS02045 (NYE42_02040) - 435352..436299 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  NYE42_RS02050 (NYE42_02045) - 436293..437051 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  NYE42_RS02055 (NYE42_02050) - 437073..438017 (+) 945 WP_265451314.1 siderophore ABC transporter substrate-binding protein -
  NYE42_RS02060 (NYE42_02055) - 438059..439483 (-) 1425 WP_007410276.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=986108 NYE42_RS02040 WP_059366593.1 434409..435362(+) (ceuB) [Bacillus sp. FSL K6-2865]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=986108 NYE42_RS02040 WP_059366593.1 434409..435362(+) (ceuB) [Bacillus sp. FSL K6-2865]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCGGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGATTGGGCAAGGCTCGGAATCTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATTCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATATGACCTGATC
CAAAACCTGTCGTCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTTTTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536

Multiple sequence alignment