Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MHI58_RS17075 Genome accession   NZ_CP152035
Coordinates   3292262..3292951 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL K6-2869     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3287262..3297951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI58_RS17040 (MHI58_17040) - 3287348..3287830 (-) 483 WP_039169793.1 flagellar protein FlgN -
  MHI58_RS17045 (MHI58_17045) flgM 3287849..3288112 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHI58_RS17050 (MHI58_17050) - 3288192..3288611 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  MHI58_RS17055 (MHI58_17055) comFC 3288668..3289354 (-) 687 WP_176544677.1 ComF family protein Machinery gene
  MHI58_RS17060 (MHI58_17060) - 3289351..3289644 (-) 294 WP_008348267.1 competence protein ComFB -
  MHI58_RS17065 (MHI58_17065) comFA 3289709..3290836 (-) 1128 WP_045033977.1 DEAD/DEAH box helicase Machinery gene
  MHI58_RS17070 (MHI58_17070) - 3291208..3292050 (-) 843 WP_024719242.1 DegV family protein -
  MHI58_RS17075 (MHI58_17075) degU 3292262..3292951 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MHI58_RS17080 (MHI58_17080) degS 3293016..3294191 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  MHI58_RS17085 (MHI58_17085) - 3294413..3295081 (+) 669 WP_017357860.1 YigZ family protein -
  MHI58_RS17090 (MHI58_17090) - 3295066..3296163 (+) 1098 WP_024719244.1 LCP family protein -
  MHI58_RS17095 (MHI58_17095) - 3296202..3297269 (-) 1068 WP_024719245.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=986090 MHI58_RS17075 WP_008348273.1 3292262..3292951(-) (degU) [Bacillus sp. FSL K6-2869]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=986090 MHI58_RS17075 WP_008348273.1 3292262..3292951(-) (degU) [Bacillus sp. FSL K6-2869]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATTTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment