Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MHI60_RS10080 Genome accession   NZ_CP152032
Coordinates   2003965..2005362 (+) Length   465 a.a.
NCBI ID   WP_144483668.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-3200     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1998965..2010362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI60_RS10060 (MHI60_10060) - 1999966..2000634 (-) 669 WP_012011434.1 YigZ family protein -
  MHI60_RS10065 (MHI60_10065) degS 2000854..2002029 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  MHI60_RS10070 (MHI60_10070) degU 2002094..2002783 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MHI60_RS10075 (MHI60_10075) - 2003002..2003844 (+) 843 WP_144483671.1 DegV family protein -
  MHI60_RS10080 (MHI60_10080) comFA 2003965..2005362 (+) 1398 WP_144483668.1 DEAD/DEAH box helicase Machinery gene
  MHI60_RS10085 (MHI60_10085) - 2005412..2005705 (+) 294 WP_041088040.1 competence protein ComFB -
  MHI60_RS10090 (MHI60_10090) comFC 2005702..2006388 (+) 687 WP_186437285.1 ComF family protein Machinery gene
  MHI60_RS10095 (MHI60_10095) - 2006445..2006864 (+) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  MHI60_RS10100 (MHI60_10100) flgM 2006944..2007207 (+) 264 WP_095409676.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHI60_RS10105 (MHI60_10105) - 2007226..2007708 (+) 483 WP_144472023.1 flagellar protein FlgN -
  MHI60_RS10110 (MHI60_10110) flgK 2007724..2009244 (+) 1521 WP_144483665.1 flagellar hook-associated protein FlgK -
  MHI60_RS10115 (MHI60_10115) flgL 2009254..2010162 (+) 909 WP_144472025.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53108.92 Da        Isoelectric Point: 9.8804

>NTDB_id=985888 MHI60_RS10080 WP_144483668.1 2003965..2005362(+) (comFA) [Bacillus sp. FSL K6-3200]
MNMDKAMELKRHLYSRHLLTVETRCAQSNLDWLEEKGLVNRTPAIERKADGFTCYRCGVSHKRYFAHSPCEECQKDCVYC
RSCIMMGKATECGFLYEWTGPKMVEAYRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGITIAVLYGGSSQRFQIAPLVIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRKNGGVRIYLSATPSKKMTIEVSRGKLEAIKIPLRFHQQPLPVPTFQWIGHWKKKLKKKQLPSKVMNWMQ
RHIANKRRVLLFVPSIAVMKKATKILREHSLNVEGVSADDPDRKQKVQHFRDYAYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKNHIVKMNDTAAKEFTEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=985888 MHI60_RS10080 WP_144483668.1 2003965..2005362(+) (comFA) [Bacillus sp. FSL K6-3200]
TTGAACATGGACAAAGCAATGGAACTAAAGCGGCATCTGTATTCACGCCATCTGCTCACTGTTGAAACAAGGTGCGCACA
GTCCAATTTAGATTGGCTGGAGGAGAAAGGCTTAGTTAATCGAACACCTGCCATTGAGAGGAAAGCAGATGGTTTTACAT
GCTACCGGTGTGGTGTATCACACAAGCGGTACTTTGCTCACTCTCCATGTGAAGAGTGTCAAAAGGATTGTGTGTACTGT
AGGTCATGCATCATGATGGGAAAAGCAACTGAATGTGGATTTCTTTATGAATGGACGGGTCCAAAAATGGTAGAAGCATA
TCGAGCCGAATTAACATGGCAGGGAGAGTTGTCTAAAGGACAAAAAAGAGCATCAGAAAGAATGATCGAAGCTATTAAAA
ACAAATTTGATCTACTCGTCTGGGCGGTTTGTGGGGCAGGGAAAACGGAAGTGCTTTTTCATGGAATTGAATATGCGTTA
AACCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTTGAACCACGGCTTAGAAAAGCATT
TCAAGGGATAACAATAGCCGTACTTTATGGAGGCAGTTCACAAAGGTTTCAAATAGCACCGCTTGTAATCGCTACAACCC
ATCAGCTGATGAGATACAAAAATGCATTTGATGTGCTTATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAA
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATATATTTAAGTGCGACACCCTCTAAAAA
AATGACGATAGAGGTTTCTCGTGGAAAACTGGAAGCGATAAAAATTCCTCTGCGTTTTCACCAGCAACCATTACCCGTCC
CGACCTTTCAATGGATCGGACATTGGAAAAAGAAATTAAAAAAGAAGCAGCTTCCTTCTAAAGTGATGAATTGGATGCAG
AGACATATTGCCAATAAGAGAAGAGTATTACTTTTTGTTCCTTCTATTGCTGTCATGAAGAAGGCAACGAAGATTCTTCG
AGAACACTCCTTAAACGTAGAGGGAGTATCTGCCGATGATCCAGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
CATACGATGTACTAGTTACAACCACTATTTTAGAAAGAGGCGTAACCATACCAAATGTTCAAGTAGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGAAGAGTGGGCAGACATCCCGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAATCATATCGTAAAAATGAATGATACGGCTG
CAAAAGAGTTTACTGAAAAACAGTGTGGCTTCAACTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(324-420)

Type III restriction enzyme, res subunit (ResIII)

(116-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.754

98.065

0.508

Multiple sequence alignment