Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MHI60_RS10070 Genome accession   NZ_CP152032
Coordinates   2002094..2002783 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL K6-3200     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1997094..2007783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI60_RS10050 (MHI60_10050) - 1997787..1998854 (+) 1068 WP_048237563.1 MraY family glycosyltransferase -
  MHI60_RS10055 (MHI60_10055) - 1998890..1999981 (-) 1092 WP_144483674.1 LCP family protein -
  MHI60_RS10060 (MHI60_10060) - 1999966..2000634 (-) 669 WP_012011434.1 YigZ family protein -
  MHI60_RS10065 (MHI60_10065) degS 2000854..2002029 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  MHI60_RS10070 (MHI60_10070) degU 2002094..2002783 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MHI60_RS10075 (MHI60_10075) - 2003002..2003844 (+) 843 WP_144483671.1 DegV family protein -
  MHI60_RS10080 (MHI60_10080) comFA 2003965..2005362 (+) 1398 WP_144483668.1 DEAD/DEAH box helicase Machinery gene
  MHI60_RS10085 (MHI60_10085) - 2005412..2005705 (+) 294 WP_041088040.1 competence protein ComFB -
  MHI60_RS10090 (MHI60_10090) comFC 2005702..2006388 (+) 687 WP_186437285.1 ComF family protein Machinery gene
  MHI60_RS10095 (MHI60_10095) - 2006445..2006864 (+) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  MHI60_RS10100 (MHI60_10100) flgM 2006944..2007207 (+) 264 WP_095409676.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHI60_RS10105 (MHI60_10105) - 2007226..2007708 (+) 483 WP_144472023.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=985887 MHI60_RS10070 WP_008348273.1 2002094..2002783(+) (degU) [Bacillus sp. FSL K6-3200]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=985887 MHI60_RS10070 WP_008348273.1 2002094..2002783(+) (degU) [Bacillus sp. FSL K6-3200]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTAAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGTTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment