Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R8623_RS02470 Genome accession   NZ_AP026928
Coordinates   484722..485453 (+) Length   243 a.a.
NCBI ID   WP_000889921.1    Uniprot ID   A0AAI8ZWM3
Organism   Streptococcus pneumoniae strain PZ900700406     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 479722..490453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8623_RS02445 (PC0401_04770) - 481363..481719 (+) 357 WP_000114422.1 hypothetical protein -
  R8623_RS02450 (PC0401_04780) dnaJ 482121..483257 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  R8623_RS02455 - 483591..483785 (-) 195 WP_001808905.1 hypothetical protein -
  R8623_RS02460 (PC0401_04790) - 483947..484234 (-) 288 WP_000777753.1 hypothetical protein -
  R8623_RS02465 (PC0401_04800) - 484244..484654 (-) 411 WP_001278301.1 HIT family protein -
  R8623_RS02470 (PC0401_04810) pptA 484722..485453 (+) 732 WP_000889921.1 ABC transporter ATP-binding protein Regulator
  R8623_RS02475 (PC0401_04820) - 485450..486499 (+) 1050 WP_000653771.1 ABC transporter permease -
  R8623_RS02480 (PC0401_04830) - 486667..486996 (-) 330 WP_000132572.1 hypothetical protein -
  R8623_RS02485 (PC0401_04840) - 487272..487610 (+) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  R8623_RS02490 (PC0401_04850) comE/blpR 487615..488352 (+) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  R8623_RS02495 (PC0401_04860) - 488366..489706 (+) 1341 WP_001017642.1 sensor histidine kinase -
  R8623_RS02500 (PC0401_04870) blpC 489777..489905 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26998.46 Da        Isoelectric Point: 4.7792

>NTDB_id=98568 R8623_RS02470 WP_000889921.1 484722..485453(+) (pptA) [Streptococcus pneumoniae strain PZ900700406]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVADPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=98568 R8623_RS02470 WP_000889921.1 484722..485453(+) (pptA) [Streptococcus pneumoniae strain PZ900700406]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGCGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

71.784

99.177

0.712
  pptA Streptococcus thermophilus LMD-9

70.954

99.177

0.704

Multiple sequence alignment