Detailed information NTG0985473

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACLB5D_RS07155
• Genome accession: NZ_CP184143
• Coordinates: 1408367..1409359 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain F11
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1403367..1414359

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLB5D_RS07135	otnK	1404142..1405404 (+)	1263	WP_000590386.1	3-oxo-tetronate kinase	-
ACLB5D_RS07140	ygbL	1405401..1406039 (+)	639	WP_001278994.1	aldolase	-
ACLB5D_RS07145	ygbM	1406044..1406820 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
ACLB5D_RS07150	ygbN	1406909..1408273 (+)	1365	WP_000104459.1	GntP family transporter	-
ACLB5D_RS07155	rpoS	1408367..1409359 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACLB5D_RS07160	nlpD	1409422..1410516 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ACLB5D_RS07165	pcm	1410701..1411327 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACLB5D_RS07170	surE	1411321..1412082 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACLB5D_RS07175	truD	1412063..1413112 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACLB5D_RS07180	ispF	1413109..1413588 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACLB5D_RS07185	ispD	1413588..1414298 (-)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=985473 ACLB5D_RS07155 WP_000081550.1 1408367..1409359(-) (rpoS) [Escherichia coli strain F11]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=985473 ACLB5D_RS07155 WP_000081550.1 1408367..1409359(-) (rpoS) [Escherichia coli strain F11]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715