Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MKX52_RS16010 Genome accession   NZ_CP152014
Coordinates   3110207..3110896 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL R5-0422     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3105207..3115896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX52_RS15975 (MKX52_15975) - 3105285..3105767 (-) 483 WP_012011428.1 flagellar protein FlgN -
  MKX52_RS15980 (MKX52_15980) flgM 3105786..3106049 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  MKX52_RS15985 (MKX52_15985) - 3106129..3106548 (-) 420 WP_012011429.1 TIGR03826 family flagellar region protein -
  MKX52_RS15990 (MKX52_15990) comFC 3106605..3107291 (-) 687 WP_342491017.1 ComF family protein Machinery gene
  MKX52_RS15995 (MKX52_15995) - 3107288..3107581 (-) 294 WP_088004423.1 late competence development ComFB family protein -
  MKX52_RS16000 (MKX52_16000) comFA 3107648..3109027 (-) 1380 WP_140404325.1 DEAD/DEAH box helicase Machinery gene
  MKX52_RS16005 (MKX52_16005) - 3109147..3109989 (-) 843 WP_088004424.1 DegV family protein -
  MKX52_RS16010 (MKX52_16010) degU 3110207..3110896 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MKX52_RS16015 (MKX52_16015) degS 3110961..3112136 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  MKX52_RS16020 (MKX52_16020) - 3112358..3113026 (+) 669 WP_012011434.1 YigZ family protein -
  MKX52_RS16025 (MKX52_16025) - 3113011..3114102 (+) 1092 WP_119125450.1 LCP family protein -
  MKX52_RS16030 (MKX52_16030) - 3114138..3115205 (-) 1068 WP_342491018.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=984992 MKX52_RS16010 WP_008348273.1 3110207..3110896(-) (degU) [Bacillus sp. FSL R5-0422]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=984992 MKX52_RS16010 WP_008348273.1 3110207..3110896(-) (degU) [Bacillus sp. FSL R5-0422]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCAGATGTTGTCA
TTATGGATATTAATATGCCGAATGTTAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGACGAAAACTATGTGACACATGCATTGAAAACAGGAGCAAGAGGCTATCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCGCATCCGCAGCATGAAGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAGACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment