Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MKX52_RS16000 Genome accession   NZ_CP152014
Coordinates   3107648..3109027 (-) Length   459 a.a.
NCBI ID   WP_140404325.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0422     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3102648..3114027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX52_RS15965 (MKX52_15965) flgL 3102828..3103739 (-) 912 WP_012011426.1 flagellar hook-associated protein FlgL -
  MKX52_RS15970 (MKX52_15970) flgK 3103749..3105269 (-) 1521 WP_012011427.1 flagellar hook-associated protein FlgK -
  MKX52_RS15975 (MKX52_15975) - 3105285..3105767 (-) 483 WP_012011428.1 flagellar protein FlgN -
  MKX52_RS15980 (MKX52_15980) flgM 3105786..3106049 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  MKX52_RS15985 (MKX52_15985) - 3106129..3106548 (-) 420 WP_012011429.1 TIGR03826 family flagellar region protein -
  MKX52_RS15990 (MKX52_15990) comFC 3106605..3107291 (-) 687 WP_342491017.1 ComF family protein Machinery gene
  MKX52_RS15995 (MKX52_15995) - 3107288..3107581 (-) 294 WP_088004423.1 late competence development ComFB family protein -
  MKX52_RS16000 (MKX52_16000) comFA 3107648..3109027 (-) 1380 WP_140404325.1 DEAD/DEAH box helicase Machinery gene
  MKX52_RS16005 (MKX52_16005) - 3109147..3109989 (-) 843 WP_088004424.1 DegV family protein -
  MKX52_RS16010 (MKX52_16010) degU 3110207..3110896 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MKX52_RS16015 (MKX52_16015) degS 3110961..3112136 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  MKX52_RS16020 (MKX52_16020) - 3112358..3113026 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52454.44 Da        Isoelectric Point: 10.1180

>NTDB_id=984991 MKX52_RS16000 WP_140404325.1 3107648..3109027(-) (comFA) [Bacillus sp. FSL R5-0422]
MNMDKAMKLGEQLQSRHLLTAETRCLQSELDWLEEKGLVIRRPAIERKANGLICCRCGVSKNQYFAHSPCDKCQKDCVYC
RSCIMMGKTLECEFLYEWTGPPIEGTAHTELTWRGNLSKGQKRASEKLIEAIKHKSDLLIWAVCGAGKTEVLFQGIEYAL
HQGMRVCIATPRTDVVLELEPRLKKAFHGLKIAALYGGSLQRFQIAPLVIATTHQLMRYKHAFDVLVIDEVDAFPYSIDE
RLQFAVLKAMRKKGVRVYLSATPSKKMIRDVSRGQLEAIKIPLRFHQQPLPVPSFQWIGHWKKKLKKNQLPPIVMNWMQN
HIAKKRRVLLFVPSISTMKKVTKVLRKHHLNVEGVSADDPDRKQKVQQFRDDKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVFFFHFGLTRSMKQAKDHIVKMNDTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=984991 MKX52_RS16000 WP_140404325.1 3107648..3109027(-) (comFA) [Bacillus sp. FSL R5-0422]
TTGAACATGGACAAAGCAATGAAACTCGGGGAGCAACTGCAGTCACGCCACCTGCTTACCGCTGAAACAAGATGCTTACA
GTCTGAGTTAGATTGGCTGGAGGAGAAAGGGTTAGTTATCCGAAGGCCTGCTATTGAGAGGAAAGCAAATGGTCTTATTT
GTTGCAGATGTGGTGTTTCAAAAAATCAATACTTTGCCCACTCTCCATGTGACAAGTGTCAAAAAGATTGTGTGTACTGT
AGATCATGCATCATGATGGGGAAAACATTGGAATGTGAATTTCTATATGAATGGACGGGTCCACCCATAGAAGGAACCGC
TCACACGGAATTAACATGGCGGGGAAACCTGTCTAAAGGACAAAAAAGAGCATCAGAAAAATTGATCGAAGCGATAAAAC
ACAAATCTGATTTACTTATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAAGTTCTTTTTCAAGGAATAGAATATGCCTTA
CATCAAGGAATGAGGGTATGCATTGCGACACCTAGAACTGATGTGGTCCTTGAACTAGAGCCTCGGCTTAAAAAAGCATT
TCACGGACTGAAAATAGCTGCTCTTTATGGAGGAAGTCTTCAAAGGTTCCAAATAGCTCCGCTAGTAATCGCTACAACTC
ATCAGTTGATGAGATATAAACATGCATTTGATGTGCTCGTTATAGATGAAGTTGATGCCTTTCCTTATTCAATTGATGAA
CGACTCCAATTTGCTGTTTTAAAGGCAATGAGAAAAAAAGGCGTTAGGGTTTATTTAAGTGCGACGCCATCTAAGAAAAT
GATAAGAGATGTATCTCGTGGACAACTAGAAGCCATAAAAATCCCTCTTCGCTTTCACCAACAACCTTTACCTGTCCCAT
CCTTTCAATGGATTGGACACTGGAAGAAGAAATTAAAAAAGAACCAGCTTCCACCTATAGTAATGAATTGGATGCAGAAC
CATATTGCAAAGAAGAGAAGGGTTTTACTTTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACGAAGGTTCTTAGAAA
ACACCACTTAAATGTAGAAGGGGTGTCTGCTGATGATCCAGATAGGAAACAAAAGGTCCAGCAATTCAGAGATGACAAAT
ACGATGTATTAGTTACAACCACAATTCTTGAAAGAGGCGTAACCATTCCAAATGTGCAAGTGGGGGTGCTAGGTGCAGAA
TCTACTATCTTTACAGAAAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGT
TTTCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGGATCATATTGTAAAAATGAATGATACAGCTGAAA
AAGAGTTCTCAGAAAAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(322-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

53.187

99.129

0.527

Multiple sequence alignment