Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NYE28_RS16525 Genome accession   NZ_CP152013
Coordinates   3278831..3279475 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus sp. FSL R5-0443     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3273831..3284475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE28_RS16490 (NYE28_16490) - 3275016..3275447 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  NYE28_RS16495 (NYE28_16495) - 3275447..3275788 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  NYE28_RS16500 (NYE28_16500) - 3275781..3277262 (+) 1482 WP_080130026.1 Na+/H+ antiporter subunit D -
  NYE28_RS16505 (NYE28_16505) - 3277268..3277744 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  NYE28_RS16510 (NYE28_16510) - 3277744..3278028 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  NYE28_RS16515 (NYE28_16515) mnhG 3278012..3278386 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  NYE28_RS16520 (NYE28_16520) - 3278426..3278809 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  NYE28_RS16525 (NYE28_16525) comA 3278831..3279475 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  NYE28_RS16530 (NYE28_16530) comP 3279556..3281847 (-) 2292 WP_160223246.1 histidine kinase Regulator
  NYE28_RS16535 (NYE28_16535) comX 3281859..3282023 (-) 165 WP_061581461.1 competence pheromone ComX -
  NYE28_RS16540 (NYE28_16540) - 3282023..3282901 (-) 879 WP_038460875.1 polyprenyl synthetase family protein -
  NYE28_RS16545 (NYE28_16545) degQ 3283086..3283226 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  NYE28_RS16550 (NYE28_16550) - 3283691..3284032 (+) 342 WP_025285192.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=984921 NYE28_RS16525 WP_003152052.1 3278831..3279475(-) (comA) [Bacillus sp. FSL R5-0443]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=984921 NYE28_RS16525 WP_003152052.1 3278831..3279475(-) (comA) [Bacillus sp. FSL R5-0443]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment