Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NYE68_RS13430 Genome accession   NZ_CP152012
Coordinates   2707680..2708117 (-) Length   145 a.a.
NCBI ID   WP_015417817.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0447     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2702680..2713117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE68_RS13380 (NYE68_13380) sinI 2703064..2703237 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  NYE68_RS13385 (NYE68_13385) sinR 2703271..2703606 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  NYE68_RS13390 (NYE68_13390) - 2703654..2704439 (-) 786 WP_007408329.1 TasA family protein -
  NYE68_RS13395 (NYE68_13395) - 2704504..2705088 (-) 585 WP_015240205.1 signal peptidase I -
  NYE68_RS13400 (NYE68_13400) tapA 2705060..2705731 (-) 672 WP_324636720.1 amyloid fiber anchoring/assembly protein TapA -
  NYE68_RS13405 (NYE68_13405) - 2705990..2706319 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  NYE68_RS13410 (NYE68_13410) - 2706359..2706538 (-) 180 WP_003153093.1 YqzE family protein -
  NYE68_RS13415 (NYE68_13415) comGG 2706595..2706972 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  NYE68_RS13420 (NYE68_13420) comGF 2706973..2707368 (-) 396 WP_324636718.1 competence type IV pilus minor pilin ComGF -
  NYE68_RS13425 (NYE68_13425) comGE 2707382..2707696 (-) 315 WP_324636717.1 competence type IV pilus minor pilin ComGE -
  NYE68_RS13430 (NYE68_13430) comGD 2707680..2708117 (-) 438 WP_015417817.1 competence type IV pilus minor pilin ComGD Machinery gene
  NYE68_RS13435 (NYE68_13435) comGC 2708107..2708415 (-) 309 WP_015417818.1 competence type IV pilus major pilin ComGC Machinery gene
  NYE68_RS13440 (NYE68_13440) comGB 2708420..2709457 (-) 1038 WP_154817564.1 competence type IV pilus assembly protein ComGB Machinery gene
  NYE68_RS13445 (NYE68_13445) comGA 2709444..2710514 (-) 1071 WP_007408320.1 competence type IV pilus ATPase ComGA Machinery gene
  NYE68_RS13450 (NYE68_13450) - 2710707..2711657 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  NYE68_RS13455 (NYE68_13455) - 2711803..2713104 (+) 1302 WP_324636716.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16226.70 Da        Isoelectric Point: 10.1850

>NTDB_id=984830 NYE68_RS13430 WP_015417817.1 2707680..2708117(-) (comGD) [Bacillus sp. FSL R5-0447]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPACTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=984830 NYE68_RS13430 WP_015417817.1 2707680..2708117(-) (comGD) [Bacillus sp. FSL R5-0447]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGTCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGCCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCCTTTGATTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATCCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

56.164

100

0.566

Multiple sequence alignment