Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NYE21_RS13105 Genome accession   NZ_CP151999
Coordinates   2534972..2535265 (-) Length   97 a.a.
NCBI ID   WP_003183466.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-8391     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2529972..2540265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE21_RS13060 (NYE21_13060) - 2530348..2531142 (-) 795 WP_003183447.1 TasA family protein -
  NYE21_RS13065 (NYE21_13065) - 2531216..2531800 (-) 585 WP_003183449.1 signal peptidase I -
  NYE21_RS13070 (NYE21_13070) tapA 2531797..2532525 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  NYE21_RS13075 (NYE21_13075) - 2532835..2533122 (+) 288 WP_223307118.1 YqzG/YhdC family protein -
  NYE21_RS13080 (NYE21_13080) - 2533152..2533334 (-) 183 WP_003183456.1 YqzE family protein -
  NYE21_RS13085 (NYE21_13085) comGG 2533423..2533788 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  NYE21_RS13090 (NYE21_13090) comGF 2533801..2534289 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  NYE21_RS13095 (NYE21_13095) comGE 2534198..2534545 (-) 348 WP_026699160.1 competence type IV pilus minor pilin ComGE -
  NYE21_RS13100 (NYE21_13100) comGD 2534529..2534966 (-) 438 WP_026699159.1 competence type IV pilus minor pilin ComGD -
  NYE21_RS13105 (NYE21_13105) comGC 2534972..2535265 (-) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  NYE21_RS13110 (NYE21_13110) comGB 2535279..2536313 (-) 1035 WP_026699158.1 competence type IV pilus assembly protein ComGB Machinery gene
  NYE21_RS13115 (NYE21_13115) comGA 2536303..2537367 (-) 1065 WP_073425737.1 competence type IV pilus ATPase ComGA Machinery gene
  NYE21_RS13120 (NYE21_13120) - 2537524..2538363 (-) 840 WP_003183480.1 STAS domain-containing protein -
  NYE21_RS13130 (NYE21_13130) - 2538605..2538982 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  NYE21_RS13135 (NYE21_13135) - 2539191..2539436 (+) 246 WP_003183483.1 DUF2626 domain-containing protein -
  NYE21_RS13140 (NYE21_13140) - 2539474..2540112 (-) 639 WP_003183485.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10725.62 Da        Isoelectric Point: 9.1200

>NTDB_id=984232 NYE21_RS13105 WP_003183466.1 2534972..2535265(-) (comGC) [Bacillus sp. FSL K6-8391]
MNEKGFTLIEMLVVMLVISILLLITIPNVTKHNQSIQKKGCEGLINMVQAQITAYQMDHDGKTPNRAELESEGYIKKNLK
CPNGKAIKISNGKAQAD

Nucleotide


Download         Length: 294 bp        

>NTDB_id=984232 NYE21_RS13105 WP_003183466.1 2534972..2535265(-) (comGC) [Bacillus sp. FSL K6-8391]
GTGAATGAAAAGGGATTTACACTGATAGAAATGTTAGTCGTCATGCTCGTTATCTCCATCCTGCTGTTGATCACCATTCC
GAATGTGACCAAGCATAACCAAAGCATCCAAAAGAAAGGATGCGAAGGATTAATCAATATGGTTCAAGCGCAGATCACGG
CCTATCAGATGGATCATGACGGGAAAACGCCGAACAGGGCGGAGCTTGAATCTGAAGGTTACATAAAAAAGAACTTAAAG
TGTCCGAATGGGAAAGCAATTAAAATTTCAAACGGCAAAGCACAGGCTGATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

44.211

97.938

0.433
  comGC Staphylococcus aureus N315

44.211

97.938

0.433

Multiple sequence alignment