Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MKX67_RS23050 Genome accession   NZ_CP151998
Coordinates   4553846..4554358 (-) Length   170 a.a.
NCBI ID   WP_095371344.1    Uniprot ID   -
Organism   Cytobacillus sp. FSL W7-1323     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4548846..4559358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX67_RS23030 (MKX67_23030) - 4549697..4550641 (-) 945 WP_322910620.1 YybS family protein -
  MKX67_RS23035 (MKX67_23035) - 4550855..4552126 (-) 1272 WP_322910621.1 MFS transporter -
  MKX67_RS23040 (MKX67_23040) - 4552127..4552615 (-) 489 WP_233435335.1 winged helix-turn-helix domain-containing protein -
  MKX67_RS23045 (MKX67_23045) rpsR 4553561..4553800 (-) 240 WP_095371345.1 30S ribosomal protein S18 -
  MKX67_RS23050 (MKX67_23050) ssbA 4553846..4554358 (-) 513 WP_095371344.1 single-stranded DNA-binding protein Machinery gene
  MKX67_RS23055 (MKX67_23055) rpsF 4554396..4554683 (-) 288 WP_095371343.1 30S ribosomal protein S6 -
  MKX67_RS23060 (MKX67_23060) ychF 4554944..4556044 (-) 1101 WP_095371342.1 redox-regulated ATPase YchF -
  MKX67_RS23065 (MKX67_23065) - 4556357..4556548 (-) 192 WP_180317033.1 DUF951 domain-containing protein -
  MKX67_RS23070 (MKX67_23070) yyaC 4556755..4557372 (+) 618 WP_095371340.1 spore protease YyaC -
  MKX67_RS23075 (MKX67_23075) - 4557677..4558378 (-) 702 WP_095371339.1 DUF554 domain-containing protein -
  MKX67_RS23080 (MKX67_23080) - 4558441..4559295 (-) 855 WP_095371338.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18956.63 Da        Isoelectric Point: 4.9622

>NTDB_id=984189 MKX67_RS23050 WP_095371344.1 4553846..4554358(-) (ssbA) [Cytobacillus sp. FSL W7-1323]
MMNRVVLVGRLTKDPELRYTPNGVAVATFTLAVNRTFTNQNGDREADFINCVVWRKPAENVANFLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVQAESVQFLEPRNAAGSQGGSNQYGGQRDDYSYGGNNNQNQRPYDNNRSNQGQTRVDQDPFANNGQ
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=984189 MKX67_RS23050 WP_095371344.1 4553846..4554358(-) (ssbA) [Cytobacillus sp. FSL W7-1323]
ATGATGAATCGTGTAGTTCTAGTGGGGCGTTTAACGAAAGACCCAGAATTACGTTATACACCGAATGGAGTAGCAGTGGC
TACTTTTACTCTTGCTGTGAATCGTACATTTACGAATCAAAATGGAGACAGAGAAGCGGATTTCATTAATTGCGTTGTTT
GGAGAAAGCCTGCTGAAAACGTAGCGAACTTCCTTAAAAAAGGAAGCCTAGCTGGTGTCGATGGACGCTTGCAAACACGT
AATTACGAAGGACAAGATGGCAAACGTGTATATGTGACTGAAGTTCAGGCAGAAAGCGTACAGTTTCTTGAACCAAGAAA
TGCTGCAGGCTCACAAGGTGGCTCGAATCAATATGGTGGCCAGAGAGATGATTATTCTTATGGTGGCAACAATAATCAGA
ATCAACGACCATATGATAATAACCGCAGCAACCAAGGCCAAACTCGTGTAGATCAAGATCCATTCGCTAATAACGGTCAA
ATCGATATTTCCGATGACGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.556

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.427

100

0.612
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

62.353

0.382

Multiple sequence alignment