Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NSQ70_RS16270 Genome accession   NZ_CP151992
Coordinates   3158746..3159435 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL R5-0397     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3153746..3164435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ70_RS16235 (NSQ70_16235) - 3153832..3154314 (-) 483 WP_113766912.1 flagellar protein FlgN -
  NSQ70_RS16240 (NSQ70_16240) flgM 3154333..3154596 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ70_RS16245 (NSQ70_16245) - 3154676..3155095 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  NSQ70_RS16250 (NSQ70_16250) comFC 3155152..3155733 (-) 582 WP_342502276.1 ComF family protein Machinery gene
  NSQ70_RS16255 (NSQ70_16255) - 3155835..3156128 (-) 294 WP_008348267.1 competence protein ComFB -
  NSQ70_RS16260 (NSQ70_16260) comFA 3156193..3157320 (-) 1128 WP_251185086.1 DEAD/DEAH box helicase Machinery gene
  NSQ70_RS16265 (NSQ70_16265) - 3157692..3158534 (-) 843 WP_024719242.1 DegV family protein -
  NSQ70_RS16270 (NSQ70_16270) degU 3158746..3159435 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NSQ70_RS16275 (NSQ70_16275) degS 3159500..3160675 (-) 1176 WP_008360205.1 sensor histidine kinase Regulator
  NSQ70_RS16280 (NSQ70_16280) - 3160897..3161565 (+) 669 WP_251185087.1 YigZ family protein -
  NSQ70_RS16285 (NSQ70_16285) - 3161550..3162647 (+) 1098 WP_144679134.1 LCP family protein -
  NSQ70_RS16290 (NSQ70_16290) - 3162686..3163753 (-) 1068 WP_007499956.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=983947 NSQ70_RS16270 WP_008348273.1 3158746..3159435(-) (degU) [Bacillus sp. FSL R5-0397]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=983947 NSQ70_RS16270 WP_008348273.1 3158746..3159435(-) (degU) [Bacillus sp. FSL R5-0397]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATAAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGTTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment