Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NSQ30_RS20495 Genome accession   NZ_CP151990
Coordinates   3931945..3932490 (-) Length   181 a.a.
NCBI ID   WP_065097572.1    Uniprot ID   -
Organism   Bacillus sp. FSL R7-0651     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3926945..3937490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ30_RS20470 (NSQ30_20470) - 3927212..3927820 (-) 609 WP_044139045.1 alpha/beta hydrolase -
  NSQ30_RS20475 (NSQ30_20475) - 3927817..3928788 (-) 972 WP_065097574.1 ring-cleaving dioxygenase -
  NSQ30_RS20480 (NSQ30_20480) - 3928980..3930497 (-) 1518 WP_319610050.1 ABC transporter permease/substrate-binding protein -
  NSQ30_RS20485 (NSQ30_20485) - 3930490..3931455 (-) 966 WP_044139042.1 ABC transporter ATP-binding protein -
  NSQ30_RS20490 (NSQ30_20490) rpsR 3931665..3931904 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  NSQ30_RS20495 (NSQ30_20495) ssbA 3931945..3932490 (-) 546 WP_065097572.1 single-stranded DNA-binding protein SsbA Machinery gene
  NSQ30_RS20500 (NSQ30_20500) rpsF 3932527..3932814 (-) 288 WP_044139040.1 30S ribosomal protein S6 -
  NSQ30_RS20505 (NSQ30_20505) ychF 3932923..3934023 (-) 1101 WP_044139039.1 redox-regulated ATPase YchF -
  NSQ30_RS20510 (NSQ30_20510) - 3934240..3934446 (-) 207 WP_012011910.1 DUF951 domain-containing protein -
  NSQ30_RS20515 (NSQ30_20515) - 3934732..3936051 (+) 1320 WP_265208623.1 hydrolase -
  NSQ30_RS20520 (NSQ30_20520) - 3936067..3936477 (+) 411 WP_044139037.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19763.31 Da        Isoelectric Point: 4.6109

>NTDB_id=983829 NSQ30_RS20495 WP_065097572.1 3931945..3932490(-) (ssbA) [Bacillus sp. FSL R7-0651]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGSAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPNQNPYGNQSNQQNRNQGNSF
NDDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=983829 NSQ30_RS20495 WP_065097572.1 3931945..3932490(-) (ssbA) [Bacillus sp. FSL R7-0651]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCAGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAATCAAAATCCATATGGCAATCAAAGCAACCAACAAAATCGTAATCAGGGAAATAGCTTC
AATGATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

83.978

100

0.84
  ssb Latilactobacillus sakei subsp. sakei 23K

56.354

100

0.564
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376

Multiple sequence alignment