Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACN9LM_RS21220 Genome accession   NZ_CP184002
Coordinates   4293155..4293631 (-) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli strain 884     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4288155..4298631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN9LM_RS21180 (ACN9LM_21180) - 4290268..4290573 (-) 306 Protein_4154 helix-turn-helix domain-containing protein -
  ACN9LM_RS21185 (ACN9LM_21185) - 4290836..4290949 (-) 114 Protein_4155 transcriptional regulator -
  ACN9LM_RS21190 (ACN9LM_21190) - 4290940..4291089 (-) 150 Protein_4156 hypothetical protein -
  ACN9LM_RS21195 (ACN9LM_21195) - 4291195..4291371 (-) 177 WP_000839286.1 DUF957 domain-containing protein -
  ACN9LM_RS21200 (ACN9LM_21200) - 4291388..4291876 (-) 489 WP_000761690.1 DUF5983 family protein -
  ACN9LM_RS21205 (ACN9LM_21205) - 4291873..4292250 (-) 378 WP_000854759.1 TA system toxin CbtA family protein -
  ACN9LM_RS21210 (ACN9LM_21210) - 4292340..4292708 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ACN9LM_RS21215 (ACN9LM_21215) - 4292871..4293092 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  ACN9LM_RS21220 (ACN9LM_21220) radC 4293155..4293631 (-) 477 WP_001186775.1 JAB domain-containing protein Machinery gene
  ACN9LM_RS21225 (ACN9LM_21225) - 4293647..4294120 (-) 474 WP_001350782.1 antirestriction protein -
  ACN9LM_RS21230 (ACN9LM_21230) - 4294462..4295280 (-) 819 WP_001234738.1 DUF932 domain-containing protein -
  ACN9LM_RS21235 (ACN9LM_21235) - 4295398..4295593 (-) 196 Protein_4165 DUF905 family protein -
  ACN9LM_RS21240 (ACN9LM_21240) - 4295664..4296884 (-) 1221 Protein_4166 autotransporter domain-containing protein -
  ACN9LM_RS21245 (ACN9LM_21245) - 4296909..4298522 (-) 1614 WP_000080195.1 IS66-like element ISEc23 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=983638 ACN9LM_RS21220 WP_001186775.1 4293155..4293631(-) (radC) [Escherichia coli strain 884]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=983638 ACN9LM_RS21220 WP_001186775.1 4293155..4293631(-) (radC) [Escherichia coli strain 884]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment