Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NSU13_RS16370 Genome accession   NZ_CP151986
Coordinates   3157555..3158244 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL M8-0049     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3152555..3163244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU13_RS16335 (NSU13_16335) - 3152634..3153116 (-) 483 WP_024423619.1 flagellar protein FlgN -
  NSU13_RS16340 (NSU13_16340) flgM 3153135..3153398 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSU13_RS16345 (NSU13_16345) - 3153478..3153897 (-) 420 WP_342489637.1 TIGR03826 family flagellar region protein -
  NSU13_RS16350 (NSU13_16350) comFC 3153954..3154610 (-) 657 WP_227001684.1 ComF family protein Machinery gene
  NSU13_RS16355 (NSU13_16355) - 3154637..3154930 (-) 294 WP_024423623.1 competence protein ComFB -
  NSU13_RS16360 (NSU13_16360) comFA 3154979..3156376 (-) 1398 WP_254001458.1 DEAD/DEAH box helicase Machinery gene
  NSU13_RS16365 (NSU13_16365) - 3156497..3157339 (-) 843 WP_024423625.1 DegV family protein -
  NSU13_RS16370 (NSU13_16370) degU 3157555..3158244 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NSU13_RS16375 (NSU13_16375) degS 3158309..3159484 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  NSU13_RS16380 (NSU13_16380) - 3159705..3160373 (+) 669 WP_012011434.1 YigZ family protein -
  NSU13_RS16385 (NSU13_16385) - 3160358..3161449 (+) 1092 WP_034281103.1 LCP family protein -
  NSU13_RS16390 (NSU13_16390) - 3161486..3162553 (-) 1068 WP_024423627.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=983578 NSU13_RS16370 WP_008348273.1 3157555..3158244(-) (degU) [Bacillus sp. FSL M8-0049]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=983578 NSU13_RS16370 WP_008348273.1 3157555..3158244(-) (degU) [Bacillus sp. FSL M8-0049]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACACCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGCGGCGTTTCAGCACATCCACAGCATGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment