Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NSU13_RS16360 Genome accession   NZ_CP151986
Coordinates   3154979..3156376 (-) Length   465 a.a.
NCBI ID   WP_254001458.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0049     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3149979..3161376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU13_RS16325 (NSU13_16325) flgL 3150180..3151088 (-) 909 WP_034281095.1 flagellar hook-associated protein FlgL -
  NSU13_RS16330 (NSU13_16330) flgK 3151098..3152618 (-) 1521 WP_024423618.1 flagellar hook-associated protein FlgK -
  NSU13_RS16335 (NSU13_16335) - 3152634..3153116 (-) 483 WP_024423619.1 flagellar protein FlgN -
  NSU13_RS16340 (NSU13_16340) flgM 3153135..3153398 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSU13_RS16345 (NSU13_16345) - 3153478..3153897 (-) 420 WP_342489637.1 TIGR03826 family flagellar region protein -
  NSU13_RS16350 (NSU13_16350) comFC 3153954..3154610 (-) 657 WP_227001684.1 ComF family protein Machinery gene
  NSU13_RS16355 (NSU13_16355) - 3154637..3154930 (-) 294 WP_024423623.1 competence protein ComFB -
  NSU13_RS16360 (NSU13_16360) comFA 3154979..3156376 (-) 1398 WP_254001458.1 DEAD/DEAH box helicase Machinery gene
  NSU13_RS16365 (NSU13_16365) - 3156497..3157339 (-) 843 WP_024423625.1 DegV family protein -
  NSU13_RS16370 (NSU13_16370) degU 3157555..3158244 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NSU13_RS16375 (NSU13_16375) degS 3158309..3159484 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  NSU13_RS16380 (NSU13_16380) - 3159705..3160373 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 52913.78 Da        Isoelectric Point: 9.8335

>NTDB_id=983577 NSU13_RS16360 WP_254001458.1 3154979..3156376(-) (comFA) [Bacillus sp. FSL M8-0049]
MNMDKAMELMGQLHSRHLLTVETKCPQSNLDWLEEKGLVNRSPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCVYC
RSCIMMGKAAECGFLYEWTGPQMVETGRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGVIITVLYGGSSQRFQIAPLVITTTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRKNGGVRIYLSATPSKKMTREVSRGKLEAIKIPLRFHEHPLPVPTFHWIGHWKKKLKKNQLPPKVMNWMQ
RHIANKRRILLFVPSIAVMKKVTKILREQSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIAKMNDTAAKEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=983577 NSU13_RS16360 WP_254001458.1 3154979..3156376(-) (comFA) [Bacillus sp. FSL M8-0049]
ATGAATATGGACAAAGCAATGGAACTAATGGGGCAGCTGCATTCACGCCATCTGCTCACCGTTGAAACAAAGTGCCCGCA
GTCCAATTTAGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGGTCTCCAGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTATTTCGCTCATTCTCCATGTGAAGTGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAGCAGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAACAGG
TCGAGCCGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATTAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCACGGAATCGAATATGCATTA
AATCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTCGAACCGCGGCTTAGAAAAGCATT
TCAAGGGGTGATAATTACCGTACTTTATGGAGGCAGTTCTCAAAGGTTTCAAATAGCACCGCTTGTGATCACCACAACCC
ACCAGCTGATGAGATACAAAAATGCTTTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGACTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTCGCGGAAAACTGGAAGCGATAAAAATTCCTTTGCGTTTTCACGAGCACCCATTACCCGTAC
CGACCTTTCATTGGATCGGACATTGGAAAAAGAAATTAAAAAAGAACCAACTGCCCCCTAAAGTGATGAATTGGATGCAG
AGACATATTGCAAATAAGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTGTCATGAAGAAGGTAACGAAGATTCTTCG
AGAACAATCCTTAAACGTGGAGGGAGTATCTGCCGATGATCCGGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTGGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGACGGGTAGGCAGACATCCGGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGCAAAAATGAATGATACGGCTG
CAAAAGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(324-420)

Type III restriction enzyme, res subunit (ResIII)

(116-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.193

98.065

0.512

Multiple sequence alignment