Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NSS80_RS17380 Genome accession   NZ_CP151985
Coordinates   3321757..3323154 (-) Length   465 a.a.
NCBI ID   WP_342498356.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0350     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3316757..3328154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS80_RS17345 (NSS80_17345) flgL 3316957..3317865 (-) 909 WP_034281095.1 flagellar hook-associated protein FlgL -
  NSS80_RS17350 (NSS80_17350) flgK 3317875..3319395 (-) 1521 WP_024423618.1 flagellar hook-associated protein FlgK -
  NSS80_RS17355 (NSS80_17355) - 3319411..3319893 (-) 483 WP_024423619.1 flagellar protein FlgN -
  NSS80_RS17360 (NSS80_17360) flgM 3319912..3320175 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSS80_RS17365 (NSS80_17365) - 3320255..3320674 (-) 420 WP_034281098.1 TIGR03826 family flagellar region protein -
  NSS80_RS17370 (NSS80_17370) comFC 3320731..3321387 (-) 657 WP_260983460.1 ComF family protein Machinery gene
  NSS80_RS17375 (NSS80_17375) - 3321414..3321707 (-) 294 WP_041088040.1 competence protein ComFB -
  NSS80_RS17380 (NSS80_17380) comFA 3321757..3323154 (-) 1398 WP_342498356.1 DEAD/DEAH box helicase Machinery gene
  NSS80_RS17385 (NSS80_17385) - 3323275..3324117 (-) 843 WP_024423625.1 DegV family protein -
  NSS80_RS17390 (NSS80_17390) degU 3324333..3325022 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NSS80_RS17395 (NSS80_17395) degS 3325087..3326262 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  NSS80_RS17400 (NSS80_17400) - 3326483..3327151 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53071.88 Da        Isoelectric Point: 9.9996

>NTDB_id=983516 NSS80_RS17380 WP_342498356.1 3321757..3323154(-) (comFA) [Bacillus sp. FSL M8-0350]
MNMDKAMELKRQLHSRHLLTVETRCSQSNLDWLEEKGLVNRTPAIERKADGFTCCRCGVSHKRYFAHSPCEECQKDCVYC
RSCIMMGKATECGFLYEWTGPQMVEAYRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGITIAVLYGGSSQRFQIAPLVIATTHQLMRYKNAFDLLIVDEVDAFPYSMDE
RLQFAVLKAMRKNGGVRIYLSATPSKKMTRDVSRGKLEAIKIPLRFHQQPLPVPTFQWIGHWKKKLKKKQLPSKVMNWMQ
RHIANKRRVLLFVPSIAVMKKATKILREHSLNVEGVSADDPDRKQKVQHFRDNAYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFFFHFGLTRSMKQAKKHIVKMNDTAAKEFSEKQCGFK

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=983516 NSS80_RS17380 WP_342498356.1 3321757..3323154(-) (comFA) [Bacillus sp. FSL M8-0350]
TTGAACATGGACAAAGCAATGGAACTAAAGCGGCAGCTGCATTCACGCCATCTGCTCACTGTTGAAACAAGGTGCTCACA
GTCAAATTTAGATTGGCTGGAGGAGAAAGGCTTAGTCAATCGAACACCTGCCATTGAGAGGAAAGCAGATGGTTTTACAT
GCTGCCGGTGTGGTGTTTCACATAAGCGCTACTTTGCCCACTCTCCATGTGAAGAGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAACTGAATGTGGATTTCTTTATGAATGGACGGGTCCACAAATGGTAGAAGCATA
TCGAGCCGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCATCAGAAAGAATGATCGAAGCTATTAAAA
ACAAATTTGATCTACTCGTCTGGGCGGTTTGCGGGGCAGGGAAAACGGAAGTGCTTTTTCATGGAATTGAATATGCGTTA
AATCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTTGAACCACGGCTTAGAAAAGCATT
TCAAGGGATAACAATAGCCGTACTTTATGGAGGCAGTTCGCAAAGGTTTCAAATAGCACCGCTTGTGATCGCCACAACCC
ATCAGCTGATGAGATACAAAAATGCATTTGATTTGCTTATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAA
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATATATTTAAGTGCGACACCATCTAAAAA
AATGACGAGAGATGTTTCTCGAGGAAAACTGGAAGCGATAAAAATCCCTCTGCGTTTTCACCAGCAACCATTACCCGTCC
CGACCTTTCAATGGATCGGACATTGGAAAAAGAAATTAAAAAAGAAGCAGCTTCCTTCTAAAGTGATGAATTGGATGCAG
AGACATATTGCAAATAAGAGAAGAGTATTACTTTTCGTTCCTTCAATTGCTGTCATGAAGAAGGCAACGAAGATTCTTCG
AGAACACTCTTTAAACGTAGAGGGAGTATCTGCCGATGATCCAGATAGGAAACAAAAGGTTCAGCACTTTAGAGATAACG
CATACGATGTACTAGTTACAACCACTATTTTAGAAAGAGGCGTAACCATACCAAATGTTCAAGTAGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGCAGAGTGGGCAGACATCCCGATTATTGTACAGGAGA
TGTTTTCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGTAAAAATGAATGATACGGCTG
CAAAAGAGTTTTCTGAAAAACAGTGTGGCTTCAAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(324-420)

Type III restriction enzyme, res subunit (ResIII)

(116-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.193

98.065

0.512
  comFA/cflA Streptococcus pneumoniae Rx1

38.095

94.839

0.361
  comFA/cflA Streptococcus pneumoniae D39

38.095

94.839

0.361
  comFA/cflA Streptococcus pneumoniae R6

38.095

94.839

0.361

Multiple sequence alignment