Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NSQ34_RS16175 Genome accession   NZ_CP151984
Coordinates   3143109..3143798 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL P2-0069     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3138109..3148798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ34_RS16140 (NSQ34_16140) - 3138188..3138670 (-) 483 WP_024423619.1 flagellar protein FlgN -
  NSQ34_RS16145 (NSQ34_16145) flgM 3138689..3138952 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ34_RS16150 (NSQ34_16150) - 3139032..3139451 (-) 420 WP_176967174.1 TIGR03826 family flagellar region protein -
  NSQ34_RS16155 (NSQ34_16155) comFC 3139508..3140164 (-) 657 WP_251232415.1 ComF family protein Machinery gene
  NSQ34_RS16160 (NSQ34_16160) - 3140191..3140484 (-) 294 WP_024423623.1 competence protein ComFB -
  NSQ34_RS16165 (NSQ34_16165) comFA 3140533..3141930 (-) 1398 WP_342500965.1 DEAD/DEAH box helicase Machinery gene
  NSQ34_RS16170 (NSQ34_16170) - 3142051..3142893 (-) 843 WP_024423625.1 DegV family protein -
  NSQ34_RS16175 (NSQ34_16175) degU 3143109..3143798 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NSQ34_RS16180 (NSQ34_16180) degS 3143863..3145038 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  NSQ34_RS16185 (NSQ34_16185) - 3145259..3145927 (+) 669 WP_012011434.1 YigZ family protein -
  NSQ34_RS16190 (NSQ34_16190) - 3145912..3147003 (+) 1092 WP_024423626.1 LCP family protein -
  NSQ34_RS16195 (NSQ34_16195) - 3147039..3148106 (-) 1068 WP_024423627.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=983456 NSQ34_RS16175 WP_008348273.1 3143109..3143798(-) (degU) [Bacillus sp. FSL P2-0069]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=983456 NSQ34_RS16175 WP_008348273.1 3143109..3143798(-) (degU) [Bacillus sp. FSL P2-0069]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACACCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment