Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NSQ34_RS16165 Genome accession   NZ_CP151984
Coordinates   3140533..3141930 (-) Length   465 a.a.
NCBI ID   WP_342500965.1    Uniprot ID   -
Organism   Bacillus sp. FSL P2-0069     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3135533..3146930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ34_RS16130 (NSQ34_16130) flgL 3135734..3136642 (-) 909 WP_034281095.1 flagellar hook-associated protein FlgL -
  NSQ34_RS16135 (NSQ34_16135) flgK 3136652..3138172 (-) 1521 WP_024423618.1 flagellar hook-associated protein FlgK -
  NSQ34_RS16140 (NSQ34_16140) - 3138188..3138670 (-) 483 WP_024423619.1 flagellar protein FlgN -
  NSQ34_RS16145 (NSQ34_16145) flgM 3138689..3138952 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ34_RS16150 (NSQ34_16150) - 3139032..3139451 (-) 420 WP_176967174.1 TIGR03826 family flagellar region protein -
  NSQ34_RS16155 (NSQ34_16155) comFC 3139508..3140164 (-) 657 WP_251232415.1 ComF family protein Machinery gene
  NSQ34_RS16160 (NSQ34_16160) - 3140191..3140484 (-) 294 WP_024423623.1 competence protein ComFB -
  NSQ34_RS16165 (NSQ34_16165) comFA 3140533..3141930 (-) 1398 WP_342500965.1 DEAD/DEAH box helicase Machinery gene
  NSQ34_RS16170 (NSQ34_16170) - 3142051..3142893 (-) 843 WP_024423625.1 DegV family protein -
  NSQ34_RS16175 (NSQ34_16175) degU 3143109..3143798 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NSQ34_RS16180 (NSQ34_16180) degS 3143863..3145038 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  NSQ34_RS16185 (NSQ34_16185) - 3145259..3145927 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 52933.83 Da        Isoelectric Point: 9.8335

>NTDB_id=983455 NSQ34_RS16165 WP_342500965.1 3140533..3141930(-) (comFA) [Bacillus sp. FSL P2-0069]
MNMDKAMELMGQLHSRHLLTVETKCPQSNLDWLEEKGLVNRSPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCVYC
RSCIMMGKAAECGFLYEWTGPQMVETGRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGVIITVLYGGSSQRFQIAPLVITTTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRKNGGVRIYLSATPSKKMTREVSRGKLEAMKVPLRFHEHPLPVPTFHWIGHWKKKLKKNQLPPKVMNWMQ
RHIANKRRILLFVPSIAVMKKVTKILREQSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHLDYCTGDVFLFHFGLTRSMKQAKKHIAKMNDTAAKEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=983455 NSQ34_RS16165 WP_342500965.1 3140533..3141930(-) (comFA) [Bacillus sp. FSL P2-0069]
ATGAATATGGACAAAGCAATGGAACTAATGGGGCAGCTGCATTCACGCCATCTGCTCACCGTTGAAACAAAGTGCCCGCA
GTCCAATTTAGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGGTCTCCAGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTATTTCGCTCATTCTCCATGTGAAGTGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAGCAGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAACAGG
TCGAGCCGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATTAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCACGGAATCGAATATGCATTA
AATCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTCGAACCGCGGCTTAGAAAAGCATT
TCAAGGGGTGATAATTACCGTACTTTATGGAGGCAGTTCTCAAAGGTTTCAAATAGCACCGCTTGTGATCACCACAACCC
ACCAGCTGATGAGATACAAAAATGCTTTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGACTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTCGCGGAAAACTGGAAGCGATGAAAGTTCCTTTGCGTTTTCACGAGCACCCATTACCCGTAC
CGACCTTTCATTGGATCGGACATTGGAAAAAGAAATTAAAAAAGAACCAACTGCCCCCTAAAGTGATGAATTGGATGCAG
AGACATATTGCAAATAAGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTGTCATGAAGAAGGTAACGAAGATTCTTCG
AGAACAATCCTTAAACGTGGAGGGAGTATCTGCCGATGATCCGGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTGGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGACGGGTAGGCAGACATCTGGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGCAAAAATGAATGATACGGCTG
CAAAAGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-265)

Helicase conserved C-terminal domain (Helicase_C)

(324-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.974

98.065

0.51

Multiple sequence alignment