Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ACN9LZ_RS18595 Genome accession   NZ_CP183993
Coordinates   3726922..3727659 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 736     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3721922..3732659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN9LZ_RS18580 (ACN9LZ_18580) clpC 3722376..3724949 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  ACN9LZ_RS18585 (ACN9LZ_18585) yfiH 3725079..3725810 (-) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  ACN9LZ_RS18590 (ACN9LZ_18590) rluD 3725807..3726787 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACN9LZ_RS18595 (ACN9LZ_18595) comL 3726922..3727659 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ACN9LZ_RS18600 (ACN9LZ_18600) raiA 3727929..3728270 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ACN9LZ_RS18605 (ACN9LZ_18605) pheL 3728374..3728421 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ACN9LZ_RS18610 (ACN9LZ_18610) pheA 3728520..3729680 (+) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  ACN9LZ_RS18615 (ACN9LZ_18615) tyrA 3729723..3730844 (-) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ACN9LZ_RS18620 (ACN9LZ_18620) aroF 3730855..3731925 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ACN9LZ_RS18625 (ACN9LZ_18625) yfiL 3732135..3732500 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=983455 ACN9LZ_RS18595 WP_000197686.1 3726922..3727659(+) (comL) [Escherichia coli strain 736]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=983455 ACN9LZ_RS18595 WP_000197686.1 3726922..3727659(+) (comL) [Escherichia coli strain 736]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment