Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NSQ25_RS16305 Genome accession   NZ_CP151982
Coordinates   3155037..3156434 (-) Length   465 a.a.
NCBI ID   WP_326135854.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0512     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3150037..3161434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ25_RS16270 (NSQ25_16270) flgL 3150238..3151146 (-) 909 WP_034281095.1 flagellar hook-associated protein FlgL -
  NSQ25_RS16275 (NSQ25_16275) flgK 3151156..3152676 (-) 1521 WP_024423618.1 flagellar hook-associated protein FlgK -
  NSQ25_RS16280 (NSQ25_16280) - 3152692..3153174 (-) 483 WP_024423619.1 flagellar protein FlgN -
  NSQ25_RS16285 (NSQ25_16285) flgM 3153193..3153456 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ25_RS16290 (NSQ25_16290) - 3153536..3153955 (-) 420 WP_034281098.1 TIGR03826 family flagellar region protein -
  NSQ25_RS16295 (NSQ25_16295) comFC 3154012..3154668 (-) 657 WP_326135853.1 ComF family protein Machinery gene
  NSQ25_RS16300 (NSQ25_16300) - 3154695..3154988 (-) 294 WP_024423623.1 competence protein ComFB -
  NSQ25_RS16305 (NSQ25_16305) comFA 3155037..3156434 (-) 1398 WP_326135854.1 DEAD/DEAH box helicase Machinery gene
  NSQ25_RS16310 (NSQ25_16310) - 3156555..3157397 (-) 843 WP_024423625.1 DegV family protein -
  NSQ25_RS16315 (NSQ25_16315) degU 3157613..3158302 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NSQ25_RS16320 (NSQ25_16320) degS 3158367..3159542 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  NSQ25_RS16325 (NSQ25_16325) - 3159763..3160431 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53012.92 Da        Isoelectric Point: 9.8977

>NTDB_id=983332 NSQ25_RS16305 WP_326135854.1 3155037..3156434(-) (comFA) [Bacillus sp. FSL R5-0512]
MNMDKAMELMRQLHSRHLLTVETKCPQSNLDWLEEKGLVNRSPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCVYC
RSCIMMGKAAECGFLYEWTGPQMVETGRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGVIITVLYGGSSQRFQIAPLVITTTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRKNGGVRIYLSATPSKKMTREVSRGKLEAIKIPLRFHEHPLPVPTFHWIGHWKKKLKKNQLPPKVMNWMQ
RHIANKRRILLFVPSIAVMKKVTKILREQSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIAKMNDTAAKEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=983332 NSQ25_RS16305 WP_326135854.1 3155037..3156434(-) (comFA) [Bacillus sp. FSL R5-0512]
ATGAATATGGACAAAGCAATGGAACTAATGCGGCAGCTGCATTCACGCCATCTGCTCACCGTTGAAACAAAGTGCCCGCA
GTCCAATTTAGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGGTCTCCAGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTATTTCGCTCATTCTCCATGTGAAGTGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAGCAGAATGTGGGTTTCTCTATGAATGGACAGGTCCACAAATGGTAGAAACAGG
TCGAGCCGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATTAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCACGGAATCGAATATGCATTA
AATCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTCGAACCGCGGCTTAGAAAAGCATT
TCAAGGGGTGATAATTACCGTACTTTATGGAGGCAGTTCTCAAAGGTTTCAAATAGCACCGCTTGTGATCACCACAACCC
ACCAGCTGATGAGATACAAAAATGCTTTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGACTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTCGCGGAAAACTGGAAGCGATAAAAATTCCTTTGCGTTTTCACGAGCACCCATTACCCGTAC
CGACCTTTCATTGGATCGGACATTGGAAAAAGAAATTAAAAAAGAACCAGCTGCCCCCTAAAGTGATGAATTGGATGCAG
AGACATATTGCAAATAAGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTGTCATGAAGAAGGTAACGAAGATTCTTCG
AGAACAATCCTTAAACGTGGAGGGAGTATCTGCCGATGATCCGGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTGGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAAATTTCTGGACGGGTAGGCAGACATCCGGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGCAAAAATGAATGATACGGCTG
CAAAAGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(324-420)

Type III restriction enzyme, res subunit (ResIII)

(116-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.193

98.065

0.512

Multiple sequence alignment