Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   V3C22_RS09445 Genome accession   NZ_CP183775
Coordinates   1917090..1917683 (-) Length   197 a.a.
NCBI ID   WP_002266975.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1912090..1922683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS09415 (V3C22_09415) - 1912400..1912600 (-) 201 Protein_1801 hypothetical protein -
  V3C22_RS09420 (V3C22_09420) - 1912741..1913166 (-) 426 WP_002266116.1 hypothetical protein -
  V3C22_RS09425 (V3C22_09425) spx 1913418..1913816 (-) 399 WP_002262391.1 transcriptional regulator Spx -
  V3C22_RS09430 (V3C22_09430) recA 1913901..1915052 (-) 1152 WP_002262392.1 recombinase RecA Machinery gene
  V3C22_RS09435 (V3C22_09435) cinA 1915092..1916348 (-) 1257 WP_002266115.1 competence/damage-inducible protein A Machinery gene
  V3C22_RS09440 (V3C22_09440) - 1916497..1917008 (-) 512 Protein_1806 DNA-3-methyladenine glycosylase I -
  V3C22_RS09445 (V3C22_09445) ruvA 1917090..1917683 (-) 594 WP_002266975.1 Holliday junction branch migration protein RuvA Machinery gene
  V3C22_RS09450 (V3C22_09450) hexB 1917865..1919820 (-) 1956 WP_226707231.1 DNA mismatch repair endonuclease MutL Machinery gene
  V3C22_RS09455 (V3C22_09455) - 1920045..1920324 (+) 280 Protein_1809 transposase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21866.09 Da        Isoelectric Point: 5.6313

>NTDB_id=983322 V3C22_RS09445 WP_002266975.1 1917090..1917683(-) (ruvA) [Streptococcus mutans strain Xc]
MYDYIKGNLTKITAKYIVLEAGGLGYVINVANPYSFSNQINQAIQIYIHHVVREDAHLLYGFHTEDEKAVFLNLISVSGI
GPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKTAQQMVLDLAGKFVDINEVSTDKSKVSTINNNQELEEAVEAL
LALGYKTNELKKIEKFFEGTTDTAENYIKSALKMLMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=983322 V3C22_RS09445 WP_002266975.1 1917090..1917683(-) (ruvA) [Streptococcus mutans strain Xc]
ATGTACGATTATATTAAAGGTAATTTAACCAAAATTACAGCTAAATATATTGTTTTAGAAGCTGGCGGTTTGGGTTATGT
AATTAATGTTGCCAATCCTTATAGTTTTTCTAATCAGATAAATCAAGCTATTCAAATTTATATTCACCATGTTGTCCGTG
AAGATGCCCATCTTCTTTATGGTTTTCATACTGAGGATGAAAAGGCGGTTTTTCTTAATCTTATCTCTGTTTCAGGAATC
GGTCCAACTTCAGCATTAGCTATTATTGCGGCTGATGATAATGAAGGTTTGGTTAAAGCTATTGACCACAGTGATGTAAA
CTATTTGATGAAATTCCCTAAAATTGGGAAGAAAACAGCTCAACAAATGGTGCTTGATTTAGCAGGTAAATTTGTAGATA
TTAATGAAGTCTCAACTGATAAAAGCAAAGTGAGCACTATTAATAATAATCAAGAACTTGAAGAGGCGGTTGAAGCACTT
TTGGCTCTTGGTTACAAAACAAATGAACTTAAGAAGATAGAAAAATTTTTTGAAGGAACGACTGATACGGCAGAAAATTA
TATTAAATCTGCTCTAAAAATGTTGATGAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(153-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

71.574

100

0.716
  ruvA Streptococcus pneumoniae D39

71.574

100

0.716
  ruvA Streptococcus pneumoniae TIGR4

71.574

100

0.716
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.901

100

0.411