Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NST32_RS11780 Genome accession   NZ_CP151978
Coordinates   2277522..2277815 (-) Length   97 a.a.
NCBI ID   WP_061109348.1    Uniprot ID   -
Organism   Bacillus sp. FSL L8-0215     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2272522..2282815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST32_RS11730 (NST32_11730) sinR 2272686..2273021 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  NST32_RS11735 (NST32_11735) - 2273089..2273889 (-) 801 WP_034280222.1 TasA family protein -
  NST32_RS11740 (NST32_11740) - 2273947..2274519 (-) 573 WP_034280218.1 signal peptidase I -
  NST32_RS11745 (NST32_11745) tapA 2274572..2275099 (-) 528 WP_061109347.1 amyloid fiber anchoring/assembly protein TapA -
  NST32_RS11750 (NST32_11750) - 2275399..2275677 (+) 279 WP_061109527.1 DUF3889 domain-containing protein -
  NST32_RS11755 (NST32_11755) - 2275712..2275906 (-) 195 WP_046311750.1 YqzE family protein -
  NST32_RS11760 (NST32_11760) comGG 2275966..2276349 (-) 384 WP_041117969.1 competence type IV pilus minor pilin ComGG -
  NST32_RS11765 (NST32_11765) comGF 2276346..2276873 (-) 528 WP_259407219.1 competence type IV pilus minor pilin ComGF -
  NST32_RS11770 (NST32_11770) comGE 2276785..2277099 (-) 315 WP_041106865.1 competence type IV pilus minor pilin ComGE -
  NST32_RS11775 (NST32_11775) comGD 2277083..2277529 (-) 447 WP_046311754.1 competence type IV pilus minor pilin ComGD -
  NST32_RS11780 (NST32_11780) comGC 2277522..2277815 (-) 294 WP_061109348.1 competence type IV pilus major pilin ComGC Machinery gene
  NST32_RS11785 (NST32_11785) comGB 2277832..2278872 (-) 1041 WP_061109349.1 competence type IV pilus assembly protein ComGB -
  NST32_RS11790 (NST32_11790) comGA 2278853..2279923 (-) 1071 WP_041117979.1 competence type IV pilus ATPase ComGA Machinery gene
  NST32_RS11795 (NST32_11795) - 2280101..2280976 (-) 876 WP_024422979.1 STAS domain-containing protein -
  NST32_RS11805 (NST32_11805) - 2281200..2281580 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  NST32_RS11810 (NST32_11810) - 2281793..2282035 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  NST32_RS11815 (NST32_11815) - 2282081..2282719 (-) 639 WP_024422981.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10744.66 Da        Isoelectric Point: 6.8602

>NTDB_id=983095 NST32_RS11780 WP_061109348.1 2277522..2277815(-) (comGC) [Bacillus sp. FSL L8-0215]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQAIQEKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGNVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=983095 NST32_RS11780 WP_061109348.1 2277522..2277815(-) (comGC) [Bacillus sp. FSL L8-0215]
ATGAATGATAAAGGATTTACCCTGTTAGAAATGTTAATAGTCATGCTTGTAATATCCATTCTTTTACTCATTACCATACC
GAATATTACACGTCATCACCAAGCTATTCAGGAAAAGGGCTGTGAAGGGCTTAAATCAATGGTCAGCACACAAGTGATGG
CATATGAATTGGAGCATGATGGGAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGTTATGTCAAAAAAGGATTAACT
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCAACGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

42.222

92.784

0.392
  comGC Staphylococcus aureus N315

42.222

92.784

0.392

Multiple sequence alignment