Detailed information NTG0983094

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: ACN20J_RS23205
• Genome accession: NZ_CP183383
• Coordinates: 5279640..5282249 (-)
• Length: 869 a.a.
• NCBI ID: WP_419668935.1
• Uniprot ID: -
• Organism: Streptomyces sp. 2-1
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5274640..5287249

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN20J_RS23185 (ACN20J_23180)	-	5274855..5275382 (+)	528	WP_189843291.1	YbjN domain-containing protein	-
ACN20J_RS23190 (ACN20J_23185)	-	5275428..5276627 (-)	1200	WP_372505481.1	hypothetical protein	-
ACN20J_RS23195 (ACN20J_23190)	-	5276713..5277930 (-)	1218	WP_419666677.1	pyridoxal phosphate-dependent aminotransferase	-
ACN20J_RS23200 (ACN20J_23195)	-	5278924..5279442 (+)	519	WP_189843293.1	DUF2617 family protein	-
ACN20J_RS23205 (ACN20J_23200)	clpC	5279640..5282249 (-)	2610	WP_419668935.1	ATP-dependent chaperone ClpB	Regulator
ACN20J_RS23210 (ACN20J_23205)	-	5282363..5282776 (+)	414	WP_189843294.1	pyridoxamine 5'-phosphate oxidase family protein	-
ACN20J_RS23215 (ACN20J_23210)	-	5282965..5283300 (-)	336	WP_143640154.1	hypothetical protein	-
ACN20J_RS23220 (ACN20J_23215)	-	5283626..5284609 (+)	984	WP_361893279.1	helix-turn-helix transcriptional regulator	-
ACN20J_RS23225 (ACN20J_23220)	-	5284611..5285606 (+)	996	WP_419666678.1	LuxR C-terminal-related transcriptional regulator	-
ACN20J_RS23230 (ACN20J_23225)	-	5285560..5286603 (-)	1044	WP_190230524.1	helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 869 a.a.
• Molecular weight: 95033.48 Da
• Isoelectric Point: 4.6791

>NTDB_id=983094 ACN20J_RS23205 WP_419668935.1 5279640..5282249(-) (clpC) [Streptomyces sp. 2-1]
MDAELTNRSRDAINAASNRAVTGGHADLTPAHLLLALLEGQENENITDLLAAVEADQAGVRTGAERVLSALPSVTGSTVA
PPQPNRELLAVIADAAERAKELGDEYLSTEHLLMGIAAKGGQSGDVLSQQGASAKKLLEAFQKSRGGRRVTTPDPEGQYK
ALEKFGTDFTAAAREGKLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKNKRLVS
LDLGAMVAGAKYRGEFEERLKTVLAEIKDSDGQIITFIDELHTVVGAGAGGDSSMDAGNMLKPMLARGELRMVGATTLDE
YRERIEKDPALERRFQQVLVAEPTVEDTIAILRGLKGRYEAHHKVVIADSALVAAATLSDRYITSRFLPDKAIDLVDESA
SRLRMEIDSSPVEIDELQRAVDRLRMEELALDKETDPASKQRLEKLRRDLADKEEELRGLTARWEKEKQSLNRVGELKEK
LDELRGQAERAQRDGDFDTASKLLYGEIPTLERDLEEASEAEEEAAKGTMVKEEVGPDDIADVVGAWTGIPAGRLLEGET
QKLLRMEEELGRRLIGQTEAVQAVSDAVRRTRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMIRIDMSE
YGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRMVDFRNTILVL
TSNLGSQYLVEPLTSEEEKKQQVLEVVRASFKPEFLNRLDDLVVFSALNKSELERIARLQVDRLAKRLAERRLTLEVTDA
ALAWLADEGNDPAYGARPLRRLVQTAIGDRLAKEILSGEVNDGDTVRVDAFGEGLIVGPTTAAPSGKEL

Nucleotide

• Length: 2610 bp

>NTDB_id=983094 ACN20J_RS23205 WP_419668935.1 5279640..5282249(-) (clpC) [Streptomyces sp. 2-1]
GTGGACGCCGAGCTGACCAACAGGAGCCGGGACGCGATCAACGCGGCCAGCAACCGGGCCGTGACCGGGGGTCACGCCGA
CCTCACCCCCGCGCATCTGCTTCTCGCGCTCCTTGAGGGGCAGGAGAACGAGAACATCACCGACCTGCTGGCCGCCGTCG
AGGCCGACCAGGCCGGCGTACGGACCGGCGCGGAGCGCGTACTGAGCGCGTTGCCCAGCGTGACGGGCTCCACCGTCGCC
CCGCCCCAGCCCAACCGTGAGCTGCTCGCCGTCATCGCCGACGCCGCCGAGCGTGCCAAGGAGCTGGGCGACGAGTACCT
CTCCACCGAGCACCTGCTCATGGGGATCGCGGCGAAGGGCGGCCAGAGCGGGGACGTACTCTCCCAGCAGGGAGCCAGTG
CGAAAAAGCTGCTGGAGGCTTTCCAGAAGAGCAGGGGAGGGCGCCGGGTGACCACCCCGGATCCCGAGGGCCAGTACAAG
GCACTCGAAAAGTTCGGTACGGACTTCACCGCGGCCGCGCGTGAGGGCAAGCTCGACCCCGTCATCGGCCGTGACCAGGA
GATTCGCCGGGTCGTGCAGGTGCTCAGCCGCCGCACCAAGAACAACCCCGTCCTCATCGGCGAGCCCGGCGTCGGCAAGA
CCGCCGTCGTCGAGGGGCTCGCGCAGCGGATCGTCAAGGGCGATGTGCCCGAGTCGCTCAAGAACAAGCGGCTCGTCTCG
CTCGACCTGGGCGCGATGGTGGCCGGCGCCAAGTACCGCGGTGAGTTCGAGGAGCGCCTGAAGACGGTGCTGGCCGAGAT
CAAGGACTCGGACGGCCAGATCATCACGTTCATCGACGAGCTGCACACCGTCGTGGGCGCGGGCGCCGGCGGCGACTCCT
CCATGGACGCCGGCAACATGCTGAAGCCGATGCTCGCCCGCGGTGAGCTGCGCATGGTCGGGGCGACGACCCTGGACGAG
TACCGCGAGCGGATCGAGAAGGACCCCGCCCTCGAACGCCGCTTCCAGCAGGTGCTGGTCGCCGAGCCGACCGTCGAGGA
CACCATCGCGATCCTGCGCGGACTCAAGGGCCGGTACGAGGCCCACCACAAGGTCGTCATCGCGGACAGCGCGCTCGTCG
CCGCCGCGACCCTCTCCGACCGGTACATCACCTCCCGCTTCCTGCCCGACAAGGCCATCGACCTCGTCGACGAGTCCGCG
TCCCGGCTGCGGATGGAGATCGACTCGTCCCCCGTCGAGATCGACGAACTCCAGCGTGCCGTTGACCGGTTGCGTATGGA
GGAGCTCGCGCTCGACAAGGAGACCGACCCTGCCTCCAAGCAGCGCCTCGAAAAGCTCCGCCGCGACCTCGCCGACAAGG
AGGAGGAGCTGCGCGGCCTCACCGCCCGCTGGGAGAAGGAGAAGCAGTCCCTCAACCGCGTCGGTGAGCTGAAGGAGAAG
CTCGACGAACTGCGCGGCCAGGCCGAACGGGCCCAGCGCGACGGCGACTTCGACACCGCCTCCAAGCTGCTGTACGGCGA
GATCCCCACCCTGGAAAGGGACTTGGAGGAAGCCTCCGAGGCCGAGGAGGAGGCCGCCAAGGGCACGATGGTGAAGGAGG
AGGTCGGCCCGGACGACATCGCGGACGTGGTCGGCGCCTGGACCGGCATCCCCGCCGGCCGCCTCCTGGAGGGCGAGACC
CAGAAACTCCTGCGCATGGAGGAGGAGTTGGGCCGCCGCCTCATCGGCCAGACCGAAGCCGTGCAGGCCGTCTCGGACGC
CGTGCGCCGCACCCGCGCGGGCATCGCCGACCCGGACCGCCCGACCGGCTCGTTCCTCTTCCTCGGCCCGACCGGCGTCG
GCAAGACCGAACTCGCCAAGGCCCTCGCGGACTTCCTCTTCGACGACGAGCGGGCCATGATCCGCATCGACATGTCGGAG
TACGGGGAGAAGCACAGCGTGGCCCGGCTGGTCGGCGCGCCGCCCGGCTACGTCGGTTACGAGGAGGGCGGCCAGCTGAC
CGAGGCCGTCCGCCGCCGCCCGTACAGCGTCGTGCTCCTCGACGAGGTGGAGAAGGCGCACCCGGAGGTCTTCGACATCC
TGCTCCAGGTGCTGGACGACGGCCGCCTGACGGACGGCCAGGGGCGGATGGTCGACTTCCGCAACACCATCCTGGTCCTC
ACCTCGAACCTCGGCAGCCAGTATCTGGTCGAGCCGCTGACGTCCGAGGAGGAGAAGAAGCAGCAGGTCCTGGAGGTCGT
ACGGGCTTCCTTCAAGCCGGAGTTCCTCAACCGGCTCGACGATCTGGTGGTCTTCTCCGCGCTGAACAAGTCCGAGCTGG
AGCGGATCGCCAGACTCCAGGTCGACCGCCTCGCGAAGCGGCTCGCCGAGCGGCGGCTCACCCTGGAGGTCACCGACGCG
GCGCTGGCCTGGCTCGCCGACGAGGGCAACGACCCGGCGTACGGGGCGAGGCCGTTGCGGCGGCTCGTCCAGACCGCCAT
CGGCGACCGGCTCGCCAAGGAGATCCTCTCCGGCGAGGTCAACGACGGCGACACGGTTCGCGTGGACGCGTTCGGCGAGG
GCTTGATCGTGGGCCCCACGACGGCGGCCCCCTCCGGCAAGGAGTTGTAG

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (23-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-146)

• AAA domain (Cdc48 subfamily) (AAA_2) (600-761)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (768-848)

• AAA lid domain (AAA_lid_9) (344-446)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-338)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	46.493	100	0.473
clpC	Lactococcus lactis subsp. cremoris KW2	46.884	81.243	0.381
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	45.915	81.703	0.375