Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ACN20J_RS23100 Genome accession   NZ_CP183383
Coordinates   5255233..5255898 (-) Length   221 a.a.
NCBI ID   WP_189843277.1    Uniprot ID   -
Organism   Streptomyces sp. 2-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5250233..5260898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN20J_RS23080 (ACN20J_23075) - 5250689..5251186 (-) 498 WP_419666670.1 GbsR/MarR family transcriptional regulator -
  ACN20J_RS23085 (ACN20J_23080) - 5251291..5252199 (+) 909 WP_189843275.1 ABC transporter ATP-binding protein -
  ACN20J_RS23090 (ACN20J_23085) - 5252196..5253812 (+) 1617 WP_419666671.1 ABC transporter permease -
  ACN20J_RS23095 (ACN20J_23090) - 5253943..5255154 (-) 1212 WP_419668932.1 cytochrome P450 -
  ACN20J_RS23100 (ACN20J_23095) vraR 5255233..5255898 (-) 666 WP_189843277.1 response regulator Regulator
  ACN20J_RS23105 (ACN20J_23100) - 5255895..5257244 (-) 1350 WP_419666672.1 sensor histidine kinase -
  ACN20J_RS23110 (ACN20J_23105) vraR 5257376..5258050 (-) 675 WP_190230554.1 response regulator Regulator
  ACN20J_RS23115 (ACN20J_23110) - 5258047..5259411 (-) 1365 WP_419668933.1 histidine kinase -
  ACN20J_RS23120 (ACN20J_23115) - 5259599..5260840 (-) 1242 WP_419666673.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23878.61 Da        Isoelectric Point: 4.6550

>NTDB_id=983092 ACN20J_RS23100 WP_189843277.1 5255233..5255898(-) (vraR) [Streptomyces sp. 2-1]
MTIRVLIADDQMMVREGFSVLLGAMPDIEVVGEAVNGREAVDRVRELGPDVVLMDIRMPEMNGIEATREIVAANSASKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLITEFSKLAEEPRLSPTAQAAYGDLTE
RETEVLVLIAQGLSNVEIATRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=983092 ACN20J_RS23100 WP_189843277.1 5255233..5255898(-) (vraR) [Streptomyces sp. 2-1]
ATGACCATCCGCGTACTGATCGCCGACGACCAGATGATGGTCCGCGAGGGCTTCTCGGTGCTGCTCGGCGCGATGCCGGA
CATCGAGGTCGTCGGCGAGGCGGTCAACGGCCGCGAGGCCGTGGACCGGGTCCGGGAGCTGGGGCCTGACGTCGTTCTGA
TGGACATCCGGATGCCCGAGATGAACGGCATAGAGGCGACCCGCGAGATCGTGGCGGCGAACAGCGCGTCGAAGGTGCTC
GTCCTGACGACGTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGCGCCGGAGCGTCCGGCTTCCTCCTGAAGGACGC
CTCCGCCCGGCAGCTCGCGGACGGGGTGCGGGTGGTCGCGGCCGGCGAGGCACTGCTGGCGCCCTCGGTGACGAAGCGGC
TGATCACGGAGTTCTCGAAGCTGGCCGAGGAGCCCCGCCTGTCGCCCACCGCCCAGGCGGCCTACGGAGACCTGACCGAG
CGCGAGACGGAGGTGCTGGTCCTCATAGCCCAGGGCCTGTCCAACGTCGAGATAGCCACCCGCCTGGTGGTGGCCGAGTC
CACCATCAAGACCCATGTGAGCCGCATCCTGGTCAAGCTGGGCCTGCGGGACCGCACCCAGGCGGCGGTGTTCGCCTACG
AGGCACGACTGGTGACCCCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.413

98.643

0.448
  degU Bacillus subtilis subsp. subtilis str. 168

42.396

98.19

0.416

Multiple sequence alignment