Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NST32_RS11545 Genome accession   NZ_CP151978
Coordinates   2240306..2242039 (-) Length   577 a.a.
NCBI ID   WP_340900163.1    Uniprot ID   -
Organism   Bacillus sp. FSL L8-0215     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2235306..2247039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST32_RS11525 (NST32_11525) - 2236182..2237282 (-) 1101 WP_024422933.1 Rap family tetratricopeptide repeat protein -
  NST32_RS11530 (NST32_11530) - 2237270..2237467 (-) 198 WP_024422934.1 hypothetical protein -
  NST32_RS11535 (NST32_11535) spo0A 2237739..2238542 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  NST32_RS11540 (NST32_11540) spoIVB 2238828..2240105 (-) 1278 WP_120208199.1 SpoIVB peptidase -
  NST32_RS11545 (NST32_11545) recN 2240306..2242039 (-) 1734 WP_340900163.1 DNA repair protein RecN Machinery gene
  NST32_RS11550 (NST32_11550) argR 2242073..2242522 (-) 450 WP_024422938.1 transcriptional regulator ArgR -
  NST32_RS11555 (NST32_11555) - 2242892..2243746 (-) 855 WP_041106824.1 TlyA family RNA methyltransferase -
  NST32_RS11560 (NST32_11560) dxs 2243743..2245644 (-) 1902 WP_034280265.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NST32_RS11565 (NST32_11565) - 2245795..2246685 (-) 891 WP_061109341.1 polyprenyl synthetase family protein -
  NST32_RS11570 (NST32_11570) - 2246675..2246935 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64711.52 Da        Isoelectric Point: 4.7728

>NTDB_id=983093 NST32_RS11545 WP_340900163.1 2240306..2242039(-) (recN) [Bacillus sp. FSL L8-0215]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEDIAPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDERLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSSFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIYKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=983093 NST32_RS11545 WP_340900163.1 2240306..2242039(-) (recN) [Bacillus sp. FSL L8-0215]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTTCT
AACGGGGGAAACAGGTGCCGGAAAATCCATCATGATTGACGCTGTCTCACTTCTCGTGGGAGGAAGAGGTTCCTCTGAAT
TTGTCCGCTACGGTGAAAAAAAGGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCATCCTGTATTTGCTCTATGC
GAAGAGCAGGGAATTGACGCATCAGATGAAATGATGATTCTCCGCCGTGATATTAACAACAGCGGGAAAAGCATTTGCCG
GATTAATGGAAAGCTTGTCACCATCTCACTTTTACGGGAAGTAGGACGGCTTTTGCTTGATATACATGGACAGCACGATA
ACCAGCTGCTCATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGACATTGCACCGGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCTCAAAAGCTCAGGCAGCTGTCTGAGAATGAGCAGGAAATGGT
GCACCGCTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCGGCACAATTAGAGCCGGGGGAAGATGAGAGGCTTC
AGGAAGAGCGACATCAAATCAGCAACTACGAAAAAATCTATTCCTCACTCCAAAACGCGTACAACGCTTTGCGTAATGAG
CAAGGAGGACTAGATTGGGTTGGTATGTCCTCAAGCGAGCTTGAGCAAGTGTCTGAAATCAACGATGATTTGAAAAAGTT
ATCTGAACAAGTGTCGAACTCCTACTACTTATTAGAGGATTCAACTTTCCAAATGCGAAGCATGCTGGACCAATTAGAAT
TTGATCCGGCTCGTCTTGATTTTATTGAGTCCAGGCTGAATGAAATGAAGCAGTTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATCCAAAATCGAGACAGCCATCTGCAGACGCT
CAAAAATAAATTAGATGCGATGAGCCGTGATGCTCTGCTGGAAGCACTTAACGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCAAAGCAAATTCAAACAGAGCTCAAGGATTTGTATATGGAGAAGTCATCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCATTTGGCAGCACTGATTGTCCGCTATTAGACGGAAAACCTGTCCAGCTCGGGAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCAGGTGGAGAAATTTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCTAAACAAGACGTCACATCCATTATTTTCGATGAAGTTGATACAGGT
GTCAGCGGCAGAGTGGCACAAGCCATTGCTGAGAAAATTTACAAAGTTGCGTCTGGATCACAAGTGCTCTGTATTACACA
CCTGCCTCAAGTAGCCGCAATGGCTGACACGCATCTCTTCATTTCTAAACGCTCGAAAGCGGGCAGAACACTGACGAGTG
TTAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTGACTGAGCTGACAAAA
CAGCACGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.737

100

0.757

Multiple sequence alignment