Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ACN20J_RS23110 Genome accession   NZ_CP183383
Coordinates   5257376..5258050 (-) Length   224 a.a.
NCBI ID   WP_190230554.1    Uniprot ID   -
Organism   Streptomyces sp. 2-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5252376..5263050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN20J_RS23095 (ACN20J_23090) - 5253943..5255154 (-) 1212 WP_419668932.1 cytochrome P450 -
  ACN20J_RS23100 (ACN20J_23095) vraR 5255233..5255898 (-) 666 WP_189843277.1 response regulator Regulator
  ACN20J_RS23105 (ACN20J_23100) - 5255895..5257244 (-) 1350 WP_419666672.1 sensor histidine kinase -
  ACN20J_RS23110 (ACN20J_23105) vraR 5257376..5258050 (-) 675 WP_190230554.1 response regulator Regulator
  ACN20J_RS23115 (ACN20J_23110) - 5258047..5259411 (-) 1365 WP_419668933.1 histidine kinase -
  ACN20J_RS23120 (ACN20J_23115) - 5259599..5260840 (-) 1242 WP_419666673.1 acyltransferase family protein -
  ACN20J_RS23125 (ACN20J_23120) - 5260833..5261759 (-) 927 WP_419668934.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24298.02 Da        Isoelectric Point: 4.7259

>NTDB_id=983093 ACN20J_RS23110 WP_190230554.1 5257376..5258050(-) (vraR) [Streptomyces sp. 2-1]
MTSGSIRVLIADDQQMVRQGFTVLLNTQPDIDVVGQAVDGLDAIAKVAELAPDVVLMDIRMPELGGIEATRRITDKTPQI
RVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDSTPRAPLKQRVGELT
ERETEVLALIAQGLSNAEIAERLFVAEQTVKTHVGRILVKLGLRDRTQAAVFAYECGLVRPTGY

Nucleotide


Download         Length: 675 bp        

>NTDB_id=983093 ACN20J_RS23110 WP_190230554.1 5257376..5258050(-) (vraR) [Streptomyces sp. 2-1]
ATGACGAGCGGCAGCATCCGCGTACTCATCGCCGACGACCAGCAGATGGTCAGGCAGGGCTTCACGGTGCTGCTCAACAC
CCAGCCCGACATCGACGTGGTCGGCCAGGCGGTCGACGGCCTGGACGCCATCGCCAAGGTCGCCGAACTCGCCCCGGACG
TCGTCCTGATGGACATCCGTATGCCCGAGCTCGGCGGCATCGAGGCCACCCGTCGCATCACCGACAAGACCCCGCAGATC
AGAGTTCTGGTGCTGACCACCTTCGACCTCGACGAGTACGTGTACGAGGCGCTGCGCGCGGGTGCCTCCGGCTTTCTGCT
GAAGGACGCGTCCGCCGACCAGCTCGCCGAGGCGGTCCGGGTGGTGGCCGCAGGCGACGCGCTGCTCGCGCCCGGGATCA
CCCGGCGCCTCATCGCGGAGTTCTCCCGGCTGGACTCCACACCCCGTGCCCCGCTCAAGCAGCGCGTCGGCGAGCTGACC
GAGCGCGAGACGGAGGTGCTGGCCCTGATCGCGCAGGGCCTGTCGAACGCGGAGATCGCCGAGCGGCTCTTCGTCGCCGA
GCAGACCGTGAAGACCCACGTGGGCCGCATCCTCGTGAAGCTGGGCCTGCGGGACCGCACCCAGGCGGCGGTGTTCGCGT
ACGAGTGCGGGCTGGTGCGCCCCACCGGCTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-120)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.37

96.429

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

41.518

100

0.415

Multiple sequence alignment