Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NST24_RS16850 Genome accession   NZ_CP151977
Coordinates   3250800..3251489 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL R5-0286     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3245800..3256489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST24_RS16815 (NST24_16815) - 3245886..3246368 (-) 483 WP_007499977.1 flagellar protein FlgN -
  NST24_RS16820 (NST24_16820) flgM 3246387..3246650 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  NST24_RS16825 (NST24_16825) - 3246730..3247149 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  NST24_RS16830 (NST24_16830) comFC 3247206..3247892 (-) 687 WP_172793290.1 ComF family protein Machinery gene
  NST24_RS16835 (NST24_16835) - 3247889..3248182 (-) 294 WP_008348267.1 competence protein ComFB -
  NST24_RS16840 (NST24_16840) comFA 3248247..3249374 (-) 1128 WP_342462019.1 DEAD/DEAH box helicase Machinery gene
  NST24_RS16845 (NST24_16845) - 3249746..3250588 (-) 843 WP_024719242.1 DegV family protein -
  NST24_RS16850 (NST24_16850) degU 3250800..3251489 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NST24_RS16855 (NST24_16855) degS 3251554..3252729 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  NST24_RS16860 (NST24_16860) - 3252951..3253619 (+) 669 WP_017357860.1 YigZ family protein -
  NST24_RS16865 (NST24_16865) - 3253604..3254701 (+) 1098 WP_024719244.1 LCP family protein -
  NST24_RS16870 (NST24_16870) - 3254740..3255807 (-) 1068 WP_024719245.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=983053 NST24_RS16850 WP_008348273.1 3250800..3251489(-) (degU) [Bacillus sp. FSL R5-0286]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=983053 NST24_RS16850 WP_008348273.1 3250800..3251489(-) (degU) [Bacillus sp. FSL R5-0286]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment