Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NSS78_RS11480 Genome accession   NZ_CP151974
Coordinates   2278672..2278965 (-) Length   97 a.a.
NCBI ID   WP_212045910.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0920     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2273672..2283965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS78_RS11430 (NSS78_11430) sinR 2273835..2274170 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  NSS78_RS11435 (NSS78_11435) - 2274238..2275038 (-) 801 WP_003217403.1 TasA family protein -
  NSS78_RS11440 (NSS78_11440) - 2275096..2275668 (-) 573 WP_003217306.1 signal peptidase I -
  NSS78_RS11445 (NSS78_11445) tapA 2275720..2276247 (-) 528 WP_212045914.1 amyloid fiber anchoring/assembly protein TapA -
  NSS78_RS11450 (NSS78_11450) - 2276547..2276825 (+) 279 WP_249118272.1 DUF3889 domain-containing protein -
  NSS78_RS11455 (NSS78_11455) - 2276859..2277053 (-) 195 WP_034620826.1 YqzE family protein -
  NSS78_RS11460 (NSS78_11460) comGG 2277113..2277496 (-) 384 WP_212045913.1 competence type IV pilus minor pilin ComGG -
  NSS78_RS11465 (NSS78_11465) comGF 2277493..2278023 (-) 531 WP_249118253.1 competence type IV pilus minor pilin ComGF -
  NSS78_RS11470 (NSS78_11470) comGE 2277932..2278249 (-) 318 WP_003217390.1 competence type IV pilus minor pilin ComGE -
  NSS78_RS11475 (NSS78_11475) comGD 2278233..2278679 (-) 447 WP_212045911.1 competence type IV pilus minor pilin ComGD -
  NSS78_RS11480 (NSS78_11480) comGC 2278672..2278965 (-) 294 WP_212045910.1 competence type IV pilus major pilin ComGC Machinery gene
  NSS78_RS11485 (NSS78_11485) - 2278982..2279575 (-) 594 WP_342468121.1 type II secretion system F family protein -
  NSS78_RS11490 (NSS78_11490) - 2279627..2280022 (-) 396 WP_342468122.1 type II secretion system F family protein -
  NSS78_RS11495 (NSS78_11495) comGA 2280003..2281073 (-) 1071 WP_249118252.1 competence type IV pilus ATPase ComGA Machinery gene
  NSS78_RS11500 (NSS78_11500) - 2281251..2282123 (-) 873 WP_003217438.1 STAS domain-containing protein -
  NSS78_RS11510 (NSS78_11510) - 2282347..2282727 (-) 381 WP_003217382.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  NSS78_RS11515 (NSS78_11515) - 2282940..2283182 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10709.71 Da        Isoelectric Point: 7.9308

>NTDB_id=982851 NSS78_RS11480 WP_212045910.1 2278672..2278965(-) (comGC) [Bacillus sp. FSL W8-0920]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQTIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELVKEGYVKKGLT
CPNGKAIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=982851 NSS78_RS11480 WP_212045910.1 2278672..2278965(-) (comGC) [Bacillus sp. FSL W8-0920]
ATGAATGATAAAGGATTTACTCTGTTAGAAATGTTAATTGTCATGCTTGTGATTTCGATTCTTTTACTGATTACCATTCC
GAATATTACTCGTCACCACCAAACGATTCAAGCAAAGGGCTGTGAAGGGCTTAAATCAATGGTGAGCACTCAGGTGATGG
CATATGAATTAGAGCACGATGGCAAGACACCATCTTTAGCTGAATTAGTAAAAGAAGGCTATGTTAAAAAGGGATTAACG
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCCATGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment