Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NSS77_RS15595 Genome accession   NZ_CP151969
Coordinates   3163617..3163922 (-) Length   101 a.a.
NCBI ID   WP_342469564.1    Uniprot ID   -
Organism   Ureibacillus sp. FSL K6-3587     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3158617..3168922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS77_RS15565 (NSS77_15565) gcvPA 3158898..3160244 (-) 1347 WP_342469558.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  NSS77_RS15570 (NSS77_15570) gcvT 3160262..3161365 (-) 1104 WP_342469559.1 glycine cleavage system aminomethyltransferase GcvT -
  NSS77_RS15575 (NSS77_15575) - 3161753..3162265 (-) 513 WP_342469560.1 shikimate kinase -
  NSS77_RS15580 (NSS77_15580) comGF 3162450..3162899 (-) 450 WP_342469561.1 competence type IV pilus minor pilin ComGF -
  NSS77_RS15585 (NSS77_15585) - 3162848..3163183 (-) 336 WP_342469562.1 hypothetical protein -
  NSS77_RS15590 (NSS77_15590) comGD 3163173..3163601 (-) 429 WP_342469563.1 competence type IV pilus minor pilin ComGD -
  NSS77_RS15595 (NSS77_15595) comGC 3163617..3163922 (-) 306 WP_342469564.1 competence type IV pilus major pilin ComGC Machinery gene
  NSS77_RS15600 (NSS77_15600) comGB 3163936..3165003 (-) 1068 WP_342469565.1 competence type IV pilus assembly protein ComGB -
  NSS77_RS15605 (NSS77_15605) comGA 3164984..3166006 (-) 1023 WP_342469566.1 competence type IV pilus ATPase ComGA -
  NSS77_RS15610 (NSS77_15610) - 3166272..3166973 (+) 702 WP_342469567.1 helix-turn-helix domain-containing protein -
  NSS77_RS15615 (NSS77_15615) - 3167088..3167330 (+) 243 WP_342469568.1 DUF2626 family protein -
  NSS77_RS15620 (NSS77_15620) - 3167560..3168834 (+) 1275 WP_342469082.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11518.59 Da        Isoelectric Point: 5.1129

>NTDB_id=982615 NSS77_RS15595 WP_342469564.1 3163617..3163922(-) (comGC) [Ureibacillus sp. FSL K6-3587]
MKNQKGFTLIEMLIVLFIISILILITVPNIMKHMNTIDDKGCKAYVQMVQGQVESYRMEHKTIPTLDDLVEKEYLKEGME
KCPNGMDIEIQSDGTVNVAKN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=982615 NSS77_RS15595 WP_342469564.1 3163617..3163922(-) (comGC) [Ureibacillus sp. FSL K6-3587]
ATGAAAAATCAGAAAGGTTTCACATTGATCGAGATGCTGATCGTGCTGTTTATCATTTCCATCCTGATTTTGATCACTGT
TCCAAACATCATGAAACACATGAATACGATTGATGACAAAGGTTGCAAGGCGTACGTGCAGATGGTGCAGGGCCAGGTGG
AATCTTACCGAATGGAACACAAAACCATTCCCACATTGGACGATTTGGTAGAAAAAGAATATTTGAAAGAAGGGATGGAG
AAATGTCCAAATGGAATGGATATTGAAATTCAATCGGACGGAACGGTTAATGTGGCCAAAAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

50.515

96.04

0.485
  comGC Latilactobacillus sakei subsp. sakei 23K

40.196

100

0.406
  comGC Staphylococcus aureus MW2

42.105

94.059

0.396
  comGC Staphylococcus aureus N315

42.105

94.059

0.396

Multiple sequence alignment