Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   NST07_RS27270 Genome accession   NZ_CP151967
Coordinates   5949394..5950107 (-) Length   237 a.a.
NCBI ID   WP_342480538.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL L8-0340     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5944394..5955107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST07_RS27250 (NST07_27250) - 5945351..5946118 (-) 768 WP_341095700.1 ABC transporter ATP-binding protein -
  NST07_RS27255 (NST07_27255) - 5946227..5947222 (-) 996 WP_341095702.1 sensor histidine kinase -
  NST07_RS27260 (NST07_27260) - 5947219..5947923 (-) 705 WP_342480536.1 response regulator transcription factor -
  NST07_RS27265 (NST07_27265) - 5947970..5949394 (-) 1425 WP_342480537.1 HAMP domain-containing sensor histidine kinase -
  NST07_RS27270 (NST07_27270) scnR 5949394..5950107 (-) 714 WP_342480538.1 response regulator transcription factor Regulator
  NST07_RS27275 (NST07_27275) - 5950265..5951182 (+) 918 WP_341380411.1 ABC transporter ATP-binding protein -
  NST07_RS27280 (NST07_27280) - 5951179..5951931 (+) 753 WP_341379603.1 ABC transporter permease -
  NST07_RS27285 (NST07_27285) - 5951944..5952675 (+) 732 WP_341379604.1 ABC transporter permease -
  NST07_RS27290 (NST07_27290) - 5952691..5952873 (+) 183 Protein_5390 YxeA family protein -
  NST07_RS27330 (NST07_27330) - 5953940..5954380 (-) 441 WP_342480539.1 tunicamycin resistance protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27054.67 Da        Isoelectric Point: 5.8334

>NTDB_id=982542 NST07_RS27270 WP_342480538.1 5949394..5950107(-) (scnR) [Paenibacillus sp. FSL L8-0340]
MDIIKNKKVLIVDDEPKILEMIEMFLRKEGFFRIFIAGNYADALRICRMEKPDAAILDVMLPDGDGFSLLSAIRTFSDMP
VLFLSARGEDEDRLLGLGLGADDYIVKPFLPRELILRLMAILKRAYAFNAPERLPVFRLGRQTIDLESAVVRREGTEFPL
TAKEHAILIKLYENQGRIVTSDALCQAVWGDDSFGYENTLMVHVRRIREKIEEEPSKPMHLLTVRGLGYKLLVQGDR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=982542 NST07_RS27270 WP_342480538.1 5949394..5950107(-) (scnR) [Paenibacillus sp. FSL L8-0340]
TTGGATATCATAAAAAATAAAAAAGTACTGATCGTGGATGACGAACCAAAAATCCTTGAAATGATAGAGATGTTTTTACG
TAAAGAAGGTTTTTTTCGTATTTTCATAGCCGGTAATTATGCTGATGCGTTGAGGATCTGCAGGATGGAAAAGCCGGATG
CGGCCATTCTGGATGTTATGCTGCCTGACGGAGATGGATTTTCTCTTCTTTCCGCAATCCGAACATTTTCGGACATGCCG
GTGCTGTTTCTCTCCGCGCGTGGAGAGGATGAGGACCGGTTGCTTGGTCTTGGGCTGGGCGCGGATGATTATATCGTCAA
GCCTTTTCTGCCGAGAGAATTGATTTTACGGCTGATGGCTATTTTAAAGCGGGCATATGCCTTCAATGCTCCCGAGAGGC
TCCCTGTCTTCCGACTGGGCAGACAGACGATAGATTTGGAAAGCGCTGTTGTGCGTAGAGAGGGTACCGAGTTTCCTCTG
ACAGCCAAAGAACACGCAATACTGATTAAACTGTATGAGAACCAAGGAAGAATCGTAACAAGTGACGCCTTATGTCAGGC
GGTATGGGGAGATGACAGCTTCGGCTATGAGAATACATTAATGGTACATGTGCGGAGAATCCGGGAAAAAATAGAAGAGG
AACCATCCAAGCCCATGCATTTGCTTACGGTACGAGGACTCGGTTATAAGCTGCTTGTACAGGGGGACCGGTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-231)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

51.092

96.624

0.494
  vicR Streptococcus mutans UA159

41.485

96.624

0.401
  micA Streptococcus pneumoniae Cp1015

40.87

97.046

0.397

Multiple sequence alignment