Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NYE49_RS16165 Genome accession   NZ_CP151962
Coordinates   3125564..3126208 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. FSL L8-0358     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3120564..3131208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE49_RS16130 (NYE49_16130) - 3121758..3122189 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NYE49_RS16135 (NYE49_16135) - 3122189..3122530 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NYE49_RS16140 (NYE49_16140) - 3122523..3124004 (+) 1482 WP_174616586.1 Na+/H+ antiporter subunit D -
  NYE49_RS16145 (NYE49_16145) - 3124010..3124486 (+) 477 WP_174616587.1 Na+/H+ antiporter subunit E -
  NYE49_RS16150 (NYE49_16150) - 3124486..3124770 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NYE49_RS16155 (NYE49_16155) mnhG 3124754..3125128 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  NYE49_RS16160 (NYE49_16160) - 3125167..3125547 (-) 381 WP_174616601.1 hotdog fold thioesterase -
  NYE49_RS16165 (NYE49_16165) comA 3125564..3126208 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NYE49_RS16170 (NYE49_16170) comP 3126289..3128589 (-) 2301 WP_063334593.1 histidine kinase Regulator
  NYE49_RS16175 (NYE49_16175) comX 3128601..3128765 (-) 165 WP_326148241.1 competence pheromone ComX -
  NYE49_RS16180 (NYE49_16180) - 3128778..3129638 (-) 861 WP_015483633.1 polyprenyl synthetase family protein -
  NYE49_RS16185 (NYE49_16185) degQ 3129823..3129963 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NYE49_RS16190 (NYE49_16190) - 3130185..3130310 (+) 126 WP_154796978.1 hypothetical protein -
  NYE49_RS16195 (NYE49_16195) - 3130424..3130792 (+) 369 WP_015483634.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=982359 NYE49_RS16165 WP_003220716.1 3125564..3126208(-) (comA) [Bacillus sp. FSL L8-0358]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=982359 NYE49_RS16165 WP_003220716.1 3125564..3126208(-) (comA) [Bacillus sp. FSL L8-0358]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment