Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NYE49_RS12835 Genome accession   NZ_CP151962
Coordinates   2506841..2507458 (-) Length   205 a.a.
NCBI ID   WP_047182900.1    Uniprot ID   -
Organism   Bacillus sp. FSL L8-0358     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2501841..2512458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE49_RS12805 (NYE49_12805) rpsT 2502143..2502409 (+) 267 WP_003229989.1 30S ribosomal protein S20 -
  NYE49_RS12810 (NYE49_12810) holA 2502424..2503467 (-) 1044 WP_047182898.1 DNA polymerase III subunit delta -
  NYE49_RS12815 (NYE49_12815) - 2503507..2503656 (-) 150 WP_120363468.1 hypothetical protein -
  NYE49_RS12820 (NYE49_12820) - 2503697..2503831 (+) 135 WP_003229983.1 YqzM family protein -
  NYE49_RS12825 (NYE49_12825) comEC 2503871..2506201 (-) 2331 WP_342410283.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NYE49_RS12830 (NYE49_12830) - 2506205..2506774 (-) 570 WP_003229978.1 ComE operon protein 2 -
  NYE49_RS12835 (NYE49_12835) comEA 2506841..2507458 (-) 618 WP_047182900.1 competence protein ComEA Machinery gene
  NYE49_RS12840 (NYE49_12840) comER 2507542..2508363 (+) 822 WP_047182901.1 late competence protein ComER -
  NYE49_RS12845 (NYE49_12845) - 2508429..2509172 (-) 744 WP_029317885.1 class I SAM-dependent methyltransferase -
  NYE49_RS12850 (NYE49_12850) rsfS 2509169..2509525 (-) 357 WP_014480315.1 ribosome silencing factor -
  NYE49_RS12855 (NYE49_12855) yqeK 2509543..2510103 (-) 561 WP_015483448.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NYE49_RS12860 (NYE49_12860) - 2510093..2510662 (-) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  NYE49_RS12865 (NYE49_12865) yhbY 2510674..2510964 (-) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  NYE49_RS12870 (NYE49_12870) aroE 2510958..2511800 (-) 843 WP_076458133.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21789.57 Da        Isoelectric Point: 4.9552

>NTDB_id=982348 NYE49_RS12835 WP_047182900.1 2506841..2507458(-) (comEA) [Bacillus sp. FSL L8-0358]
MNWLNQHKKAIILAASAAVFTAIMIVLATGKNKEPVKQAVPTETENTVVKQEANNDKSNETIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGGGVSVQNDGGKGALVNINTATLEELQGISGV
GPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=982348 NYE49_RS12835 WP_047182900.1 2506841..2507458(-) (comEA) [Bacillus sp. FSL L8-0358]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTATTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCGTTCT
TGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACAAGTCAAACGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGTACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA
GATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTGGCGGAGTGTCTG
TCCAAAACGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGGTCGTTTCCAAACAATTGAAGATATTACTAAGGT
TTCAGGAATAGGTGAAAAGTCATTTGAAAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(63-118)

Helix-hairpin-helix motif (HHH_3)

(142-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

98.049

100

0.98
  comEA Staphylococcus aureus MW2

37.273

100

0.4
  comEA Staphylococcus aureus N315

36.364

100

0.39

Multiple sequence alignment