Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   NYE49_RS12370 Genome accession   NZ_CP151962
Coordinates   2423874..2424257 (-) Length   127 a.a.
NCBI ID   WP_015384087.1    Uniprot ID   -
Organism   Bacillus sp. FSL L8-0358     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2418874..2429257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE49_RS12330 (NYE49_12330) sinI 2419809..2419982 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  NYE49_RS12335 (NYE49_12335) sinR 2420016..2420351 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NYE49_RS12340 (NYE49_12340) tasA 2420444..2421229 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  NYE49_RS12345 (NYE49_12345) - 2421293..2421865 (-) 573 WP_080030740.1 signal peptidase I -
  NYE49_RS12350 (NYE49_12350) tapA 2421849..2422610 (-) 762 WP_047182870.1 amyloid fiber anchoring/assembly protein TapA -
  NYE49_RS12355 (NYE49_12355) - 2422880..2423206 (+) 327 WP_047183570.1 YqzG/YhdC family protein -
  NYE49_RS12360 (NYE49_12360) - 2423248..2423427 (-) 180 WP_003230176.1 YqzE family protein -
  NYE49_RS12365 (NYE49_12365) comGG 2423499..2423873 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  NYE49_RS12370 (NYE49_12370) comGF 2423874..2424257 (-) 384 WP_015384087.1 ComG operon protein ComGF Machinery gene
  NYE49_RS12375 (NYE49_12375) comGE 2424283..2424630 (-) 348 WP_047182872.1 ComG operon protein 5 Machinery gene
  NYE49_RS12380 (NYE49_12380) comGD 2424614..2425045 (-) 432 WP_015384089.1 comG operon protein ComGD Machinery gene
  NYE49_RS12385 (NYE49_12385) comGC 2425035..2425331 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  NYE49_RS12390 (NYE49_12390) comGB 2425345..2426382 (-) 1038 WP_047182873.1 comG operon protein ComGB Machinery gene
  NYE49_RS12395 (NYE49_12395) comGA 2426369..2427439 (-) 1071 WP_015483431.1 competence protein ComGA Machinery gene
  NYE49_RS12400 (NYE49_12400) corA 2427849..2428802 (-) 954 WP_015483432.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14293.34 Da        Isoelectric Point: 5.1404

>NTDB_id=982339 NYE49_RS12370 WP_015384087.1 2423874..2424257(-) (comGF) [Bacillus sp. FSL L8-0358]
MLISGSLAAIFHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEDGSVLICTNLSGQDIRFDIYHSMIRKRVDG
KGHVPILDHITAMKADIENGVVLLKIESEDQKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=982339 NYE49_RS12370 WP_015384087.1 2423874..2424257(-) (comGF) [Bacillus sp. FSL L8-0358]
TTGCTCATATCAGGATCGTTAGCTGCGATTTTCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
AGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGGATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGACAAGACATCCGTTTTGACATTTATCACTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTACTGCCATGAAAGCTGATATTGAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAGGACCAAAAAGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

98.425

100

0.984

Multiple sequence alignment