Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | NYE49_RS12335 | Genome accession | NZ_CP151962 |
| Coordinates | 2420016..2420351 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus sp. FSL L8-0358 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2415016..2425351
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYE49_RS12315 (NYE49_12315) | gcvT | 2415608..2416696 (-) | 1089 | WP_015384081.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| NYE49_RS12320 (NYE49_12320) | - | 2417138..2418811 (+) | 1674 | WP_047182869.1 | SNF2-related protein | - |
| NYE49_RS12325 (NYE49_12325) | - | 2418832..2419626 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| NYE49_RS12330 (NYE49_12330) | sinI | 2419809..2419982 (+) | 174 | WP_003230187.1 | anti-repressor SinI family protein | Regulator |
| NYE49_RS12335 (NYE49_12335) | sinR | 2420016..2420351 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| NYE49_RS12340 (NYE49_12340) | tasA | 2420444..2421229 (-) | 786 | WP_003230183.1 | biofilm matrix protein TasA | - |
| NYE49_RS12345 (NYE49_12345) | - | 2421293..2421865 (-) | 573 | WP_080030740.1 | signal peptidase I | - |
| NYE49_RS12350 (NYE49_12350) | tapA | 2421849..2422610 (-) | 762 | WP_047182870.1 | amyloid fiber anchoring/assembly protein TapA | - |
| NYE49_RS12355 (NYE49_12355) | - | 2422880..2423206 (+) | 327 | WP_047183570.1 | YqzG/YhdC family protein | - |
| NYE49_RS12360 (NYE49_12360) | - | 2423248..2423427 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| NYE49_RS12365 (NYE49_12365) | comGG | 2423499..2423873 (-) | 375 | WP_014480253.1 | ComG operon protein ComGG | Machinery gene |
| NYE49_RS12370 (NYE49_12370) | comGF | 2423874..2424257 (-) | 384 | WP_015384087.1 | ComG operon protein ComGF | Machinery gene |
| NYE49_RS12375 (NYE49_12375) | comGE | 2424283..2424630 (-) | 348 | WP_047182872.1 | ComG operon protein 5 | Machinery gene |
| NYE49_RS12380 (NYE49_12380) | comGD | 2424614..2425045 (-) | 432 | WP_015384089.1 | comG operon protein ComGD | Machinery gene |
| NYE49_RS12385 (NYE49_12385) | comGC | 2425035..2425331 (-) | 297 | WP_014477332.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=982337 NYE49_RS12335 WP_003226345.1 2420016..2420351(+) (sinR) [Bacillus sp. FSL L8-0358]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=982337 NYE49_RS12335 WP_003226345.1 2420016..2420351(+) (sinR) [Bacillus sp. FSL L8-0358]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
TCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
TCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |