Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MHI30_RS18875 Genome accession   NZ_CP151961
Coordinates   3677322..3678011 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus sp. FSL L8-0528     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3672322..3683011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI30_RS18840 (MHI30_18840) - 3672491..3672967 (-) 477 WP_025810700.1 flagellar protein FlgN -
  MHI30_RS18845 (MHI30_18845) flgM 3672986..3673252 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHI30_RS18850 (MHI30_18850) - 3673332..3673751 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  MHI30_RS18855 (MHI30_18855) comFC 3673810..3674547 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  MHI30_RS18860 (MHI30_18860) - 3674504..3674788 (-) 285 WP_075751494.1 late competence development ComFB family protein -
  MHI30_RS18865 (MHI30_18865) comFA 3674843..3676237 (-) 1395 WP_075751495.1 DEAD/DEAH box helicase Machinery gene
  MHI30_RS18870 (MHI30_18870) - 3676361..3677203 (-) 843 WP_075751496.1 DegV family protein -
  MHI30_RS18875 (MHI30_18875) degU 3677322..3678011 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  MHI30_RS18880 (MHI30_18880) degS 3678093..3679250 (-) 1158 WP_020453119.1 histidine kinase Regulator
  MHI30_RS18885 (MHI30_18885) - 3679473..3680111 (+) 639 WP_075751497.1 YigZ family protein -
  MHI30_RS18890 (MHI30_18890) - 3680126..3681205 (+) 1080 WP_075751498.1 LCP family protein -
  MHI30_RS18895 (MHI30_18895) - 3681260..3681643 (-) 384 WP_048350274.1 hypothetical protein -
  MHI30_RS18900 (MHI30_18900) - 3681752..3682816 (-) 1065 WP_003185739.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=982287 MHI30_RS18875 WP_003185730.1 3677322..3678011(-) (degU) [Bacillus sp. FSL L8-0528]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=982287 MHI30_RS18875 WP_003185730.1 3677322..3678011(-) (degU) [Bacillus sp. FSL L8-0528]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTGGTAA
TCATGGATATTAATATGCCGAATGTAAACGGCGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCTATCCATGACGACGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGCGGCTATCTGCTGAAAGA
AATGGATGCCGACACGCTGATCGAAGCCGTGAAAGTTGTGGCTGAAGGCGGATCTTACCTGCATCCTAAGGTTACTCATA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAAGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTTACAAGAAGGGAATGCGAGGTTCTGCAGATGCTGGCGGACGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTGAACGACAGAA
CGCAGGCTGTCGTTGTAGCCATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987

Multiple sequence alignment