Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MHI30_RS18865 Genome accession   NZ_CP151961
Coordinates   3674843..3676237 (-) Length   464 a.a.
NCBI ID   WP_075751495.1    Uniprot ID   -
Organism   Bacillus sp. FSL L8-0528     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3669843..3681237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI30_RS18830 (MHI30_18830) flgL 3670030..3670941 (-) 912 WP_023856389.1 flagellar hook-associated protein FlgL -
  MHI30_RS18835 (MHI30_18835) flgK 3670952..3672475 (-) 1524 WP_025810701.1 flagellar hook-associated protein FlgK -
  MHI30_RS18840 (MHI30_18840) - 3672491..3672967 (-) 477 WP_025810700.1 flagellar protein FlgN -
  MHI30_RS18845 (MHI30_18845) flgM 3672986..3673252 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHI30_RS18850 (MHI30_18850) - 3673332..3673751 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  MHI30_RS18855 (MHI30_18855) comFC 3673810..3674547 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  MHI30_RS18860 (MHI30_18860) - 3674504..3674788 (-) 285 WP_075751494.1 late competence development ComFB family protein -
  MHI30_RS18865 (MHI30_18865) comFA 3674843..3676237 (-) 1395 WP_075751495.1 DEAD/DEAH box helicase Machinery gene
  MHI30_RS18870 (MHI30_18870) - 3676361..3677203 (-) 843 WP_075751496.1 DegV family protein -
  MHI30_RS18875 (MHI30_18875) degU 3677322..3678011 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  MHI30_RS18880 (MHI30_18880) degS 3678093..3679250 (-) 1158 WP_020453119.1 histidine kinase Regulator
  MHI30_RS18885 (MHI30_18885) - 3679473..3680111 (+) 639 WP_075751497.1 YigZ family protein -
  MHI30_RS18890 (MHI30_18890) - 3680126..3681205 (+) 1080 WP_075751498.1 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52775.36 Da        Isoelectric Point: 9.5292

>NTDB_id=982286 MHI30_RS18865 WP_075751495.1 3674843..3676237(-) (comFA) [Bacillus sp. FSL L8-0528]
MIYIEHPVSYSRELRSCMEQRHLLKSELPFPEPVIDWHIQEGLIKTEEGIKKTKRGFVCLRCGQHERSCFARYPCYRCNK
CCVYCRACVMMGRVSECTPLLTWRGHGRHEWAPVYTEWKGALSAGQEKAAKSIIDAIRRKEELLIWAVCGSGKTELLFQG
IEFALNNGLRVCIATPRTDVVLELAPRFRQSFPGVEIAALYGGSSDVGTLSPLVISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKQQSAHIYLTATPSADMKKRAESGKLHTVRIPARFHRSPLPEPTLIWCGNWERGLKRRKVPSRLK
KWLFKHQELQHPVFLFVPSVPVLKTVVSLLKKELFLAEGVYAEDPERNEKVNRFRESKLEVLVTTTILERGVTVKKAQVG
VLGAESAIFSESALVQMAGRAGRHPEHTDGDVCFFHHGRTKAMNAAQRHIQHMNKLSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=982286 MHI30_RS18865 WP_075751495.1 3674843..3676237(-) (comFA) [Bacillus sp. FSL L8-0528]
GTGATTTACATCGAACATCCTGTATCCTATTCCCGTGAATTGCGGTCATGTATGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTCCTTTTCCGGAACCTGTCATTGATTGGCATATCCAAGAAGGCCTGATAAAGACGGAGGAAGGCATTAAAAAAACGA
AGAGAGGCTTTGTTTGCTTGAGGTGCGGCCAGCACGAGCGCTCATGTTTCGCTCGATATCCTTGCTATAGGTGCAATAAA
TGCTGCGTGTACTGCCGGGCCTGCGTCATGATGGGCAGGGTGAGCGAGTGTACCCCTCTGTTGACTTGGCGTGGGCATGG
CAGACATGAATGGGCGCCTGTTTACACGGAGTGGAAAGGCGCACTTTCAGCCGGTCAGGAAAAAGCGGCCAAATCTATTA
TCGATGCTATACGCAGGAAAGAAGAGCTGTTGATCTGGGCGGTTTGCGGGTCGGGAAAAACAGAACTTCTTTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGTTTGAGAGTATGTATCGCCACTCCGAGAACAGACGTTGTGCTCGAGCTTGCTCCGCG
GTTTCGACAATCCTTTCCAGGGGTGGAAATTGCCGCTTTATACGGAGGGAGCTCAGACGTTGGGACTCTCTCGCCGCTTG
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCATAGATGAGGTGGATGCTTTTCCG
TATTCTATTGATAATACGCTGCAATACGCTGTTAAAAAATCGGCAAAACAGCAAAGCGCACACATCTATTTGACCGCCAC
GCCTTCTGCGGATATGAAGAAAAGGGCTGAAAGCGGAAAGCTGCACACCGTCCGTATTCCCGCGAGATTCCACCGCAGCC
CGCTGCCTGAACCTACATTGATTTGGTGCGGAAATTGGGAAAGGGGTTTGAAACGAAGAAAAGTTCCTTCTCGCCTCAAA
AAATGGCTTTTTAAGCACCAGGAACTGCAGCATCCTGTTTTTTTGTTCGTTCCCTCTGTCCCTGTTCTTAAAACCGTGGT
CAGTCTGCTGAAAAAGGAACTATTTCTCGCTGAAGGAGTTTATGCCGAAGACCCTGAGAGAAATGAAAAAGTGAACCGGT
TTAGGGAAAGTAAGCTTGAGGTGCTCGTGACGACAACGATTTTGGAAAGAGGAGTGACCGTCAAAAAAGCGCAGGTTGGA
GTATTGGGGGCAGAGTCGGCGATTTTTTCGGAAAGCGCCCTTGTCCAAATGGCCGGAAGAGCCGGCAGGCATCCCGAGCA
CACAGATGGAGACGTCTGTTTCTTTCATCACGGCAGGACAAAGGCGATGAATGCGGCACAACGTCATATTCAACATATGA
ATAAACTGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(122-269)

Helicase conserved C-terminal domain (Helicase_C)

(317-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

57.237

98.276

0.563

Multiple sequence alignment