Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MHI30_RS18855 Genome accession   NZ_CP151961
Coordinates   3673810..3674547 (-) Length   245 a.a.
NCBI ID   WP_026580174.1    Uniprot ID   -
Organism   Bacillus sp. FSL L8-0528     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3668810..3679547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI30_RS18820 (MHI30_18820) fliW 3668960..3669391 (-) 432 WP_065644255.1 flagellar assembly protein FliW -
  MHI30_RS18825 (MHI30_18825) - 3669413..3669979 (-) 567 WP_025810702.1 DUF6470 family protein -
  MHI30_RS18830 (MHI30_18830) flgL 3670030..3670941 (-) 912 WP_023856389.1 flagellar hook-associated protein FlgL -
  MHI30_RS18835 (MHI30_18835) flgK 3670952..3672475 (-) 1524 WP_025810701.1 flagellar hook-associated protein FlgK -
  MHI30_RS18840 (MHI30_18840) - 3672491..3672967 (-) 477 WP_025810700.1 flagellar protein FlgN -
  MHI30_RS18845 (MHI30_18845) flgM 3672986..3673252 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHI30_RS18850 (MHI30_18850) - 3673332..3673751 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  MHI30_RS18855 (MHI30_18855) comFC 3673810..3674547 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  MHI30_RS18860 (MHI30_18860) - 3674504..3674788 (-) 285 WP_075751494.1 late competence development ComFB family protein -
  MHI30_RS18865 (MHI30_18865) comFA 3674843..3676237 (-) 1395 WP_075751495.1 DEAD/DEAH box helicase Machinery gene
  MHI30_RS18870 (MHI30_18870) - 3676361..3677203 (-) 843 WP_075751496.1 DegV family protein -
  MHI30_RS18875 (MHI30_18875) degU 3677322..3678011 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  MHI30_RS18880 (MHI30_18880) degS 3678093..3679250 (-) 1158 WP_020453119.1 histidine kinase Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28124.81 Da        Isoelectric Point: 9.9151

>NTDB_id=982285 MHI30_RS18855 WP_026580174.1 3673810..3674547(-) (comFC) [Bacillus sp. FSL L8-0528]
MTTRFAKAIEKGGNELHCLICEAPLLHSLSWRALFFLRSEEKICRACKDNFIRIEGRTVCPKCGRPQESEELCGDCLKWE
ADPLTRSLLRQNRSVYIYNTFMKEVLARFKFRGDAELVFAFAPLFINAFHQYYRRTPAVLVPIPLSEERKAERGFNQAER
LASLLKKPVMHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDIILIDDLYTTGATLHHAAACLMTSGEAKSVSSF
TLIRS

Nucleotide


Download         Length: 738 bp        

>NTDB_id=982285 MHI30_RS18855 WP_026580174.1 3673810..3674547(-) (comFC) [Bacillus sp. FSL L8-0528]
ATGACAACCCGCTTTGCGAAAGCAATCGAAAAGGGAGGAAATGAACTGCATTGTTTAATTTGTGAAGCGCCTCTTTTACA
TTCTCTTTCATGGCGCGCTTTATTCTTTTTACGATCAGAAGAGAAAATATGCAGGGCATGTAAAGACAATTTTATCAGGA
TCGAAGGAAGAACGGTGTGCCCTAAGTGCGGGCGCCCCCAAGAGAGCGAAGAACTTTGCGGTGACTGCCTAAAATGGGAA
GCTGATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTCTATATCTACAATACCTTCATGAAAGAAGTCCTTGC
CCGTTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCTCCTTTATTTATCAATGCTTTCCACCAATATTACC
GCCGCACTCCAGCTGTTTTAGTTCCGATACCACTCAGTGAAGAACGTAAAGCGGAGCGGGGATTCAATCAGGCGGAGAGG
CTTGCTTCCTTATTAAAAAAACCCGTTATGCATCCTTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGAAA
AGAACGGATCAAGCCCAAAACGGTTTTTAGAACCGAAAAGGGATCGGTAAAGAATCTGGATATCATATTGATCGACGACT
TGTATACGACAGGGGCGACCCTTCATCATGCCGCTGCTTGTCTGATGACATCCGGTGAGGCAAAATCTGTATCATCATTT
ACATTAATTCGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(17-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

53.782

97.143

0.522

Multiple sequence alignment