Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   NSS79_RS27215 Genome accession   NZ_CP151955
Coordinates   5887431..5888144 (-) Length   237 a.a.
NCBI ID   WP_342436908.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL L8-0436     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5882431..5893144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS79_RS27195 (NSS79_27195) - 5883386..5884153 (-) 768 WP_342436904.1 ABC transporter ATP-binding protein -
  NSS79_RS27200 (NSS79_27200) - 5884263..5885258 (-) 996 WP_342436905.1 sensor histidine kinase -
  NSS79_RS27205 (NSS79_27205) - 5885255..5885959 (-) 705 WP_342436906.1 response regulator transcription factor -
  NSS79_RS27210 (NSS79_27210) - 5886007..5887431 (-) 1425 WP_342436907.1 HAMP domain-containing sensor histidine kinase -
  NSS79_RS27215 (NSS79_27215) scnR 5887431..5888144 (-) 714 WP_342436908.1 response regulator transcription factor Regulator
  NSS79_RS27220 (NSS79_27220) - 5888302..5889219 (+) 918 WP_342440449.1 ABC transporter ATP-binding protein -
  NSS79_RS27225 (NSS79_27225) - 5889216..5889968 (+) 753 WP_342436909.1 ABC transporter permease -
  NSS79_RS27230 (NSS79_27230) - 5889981..5890712 (+) 732 WP_342436910.1 ABC transporter permease -
  NSS79_RS27235 (NSS79_27235) - 5891227..5891466 (-) 240 WP_038596501.1 NifU family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26893.51 Da        Isoelectric Point: 5.7677

>NTDB_id=982039 NSS79_RS27215 WP_342436908.1 5887431..5888144(-) (scnR) [Paenibacillus sp. FSL L8-0436]
MDIIKNKKVLIVDDEPKILEMIEMFLRKEGFFRIFIAGNYADALRICRMEKPDAAILDVMLPDGDGFSLLSAIRTFSDMP
VLFLSARGEDEDRLLGLGLGADDYIVKPFLPRELILRLMAILKRAYAFNAPERLPVFRLGGQMIDLESAVVRREGTELPL
TAKEHAILIKLHENQGRIVTSDALCQAVWGDDSFGYENTLMVHVRRIREKIEEEPSKPVHLLTVRGLGYKLLVQGDR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=982039 NSS79_RS27215 WP_342436908.1 5887431..5888144(-) (scnR) [Paenibacillus sp. FSL L8-0436]
TTGGATATCATAAAAAATAAAAAAGTACTGATCGTGGATGACGAACCAAAAATCCTTGAAATGATAGAGATGTTTTTACG
TAAAGAAGGTTTTTTTCGTATTTTCATAGCTGGTAATTATGCTGATGCGTTGAGGATCTGCAGGATGGAAAAGCCGGATG
CGGCCATTCTGGATGTTATGCTGCCTGACGGAGATGGATTTTCGCTTCTTTCCGCAATCCGAACATTTTCGGACATGCCG
GTGCTGTTTCTCTCCGCGCGTGGAGAGGATGAAGACCGGTTGCTTGGCCTTGGGCTGGGCGCGGATGATTATATCGTCAA
GCCCTTTTTGCCGAGAGAATTGATTTTACGGCTGATGGCCATTTTAAAGCGGGCATATGCCTTCAATGCTCCCGAGAGGC
TCCCTGTCTTCCGGCTGGGCGGACAGATGATAGATTTGGAAAGCGCTGTTGTGCGTAGAGAGGGCACCGAGCTTCCACTG
ACAGCCAAAGAACACGCAATCCTGATTAAACTGCATGAGAACCAAGGAAGAATCGTAACAAGCGACGCCCTATGTCAGGC
GGTTTGGGGAGATGACAGCTTCGGCTATGAGAATACATTAATGGTACATGTGCGGCGAATCCGTGAAAAAATAGAAGAGG
AACCATCCAAACCCGTGCATTTACTTACGGTAAGAGGACTTGGTTATAAGCTGCTTGTACAGGGGGACCGGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.655

96.624

0.489
  vicR Streptococcus mutans UA159

41.126

97.468

0.401
  micA Streptococcus pneumoniae Cp1015

41.304

97.046

0.401

Multiple sequence alignment