Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NYE22_RS09005 Genome accession   NZ_CP151946
Coordinates   1660485..1660916 (+) Length   143 a.a.
NCBI ID   WP_032726159.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1560     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1655485..1665916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE22_RS08980 (NYE22_08980) corA 1656728..1657681 (+) 954 WP_004399136.1 magnesium transporter CorA -
  NYE22_RS08985 (NYE22_08985) - 1657683..1657880 (+) 198 WP_072173931.1 hypothetical protein -
  NYE22_RS08990 (NYE22_08990) comGA 1658091..1659161 (+) 1071 WP_342412456.1 competence protein ComGA Machinery gene
  NYE22_RS08995 (NYE22_08995) comGB 1659148..1660185 (+) 1038 WP_086344083.1 comG operon protein ComGB Machinery gene
  NYE22_RS09000 (NYE22_09000) comGC 1660199..1660495 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  NYE22_RS09005 (NYE22_09005) comGD 1660485..1660916 (+) 432 WP_032726159.1 competence type IV pilus minor pilin ComGD Machinery gene
  NYE22_RS09010 (NYE22_09010) comGE 1660900..1661247 (+) 348 WP_063335293.1 ComG operon protein 5 Machinery gene
  NYE22_RS09015 (NYE22_09015) comGF 1661273..1661656 (+) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  NYE22_RS09020 (NYE22_09020) comGG 1661657..1662031 (+) 375 WP_064671036.1 ComG operon protein ComGG Machinery gene
  NYE22_RS09025 (NYE22_09025) - 1662103..1662282 (+) 180 WP_014480252.1 YqzE family protein -
  NYE22_RS09030 (NYE22_09030) - 1662324..1662650 (-) 327 WP_021480018.1 YqzG/YhdC family protein -
  NYE22_RS09035 (NYE22_09035) tapA 1662921..1663682 (+) 762 WP_064671037.1 amyloid fiber anchoring/assembly protein TapA -
  NYE22_RS09040 (NYE22_09040) - 1663666..1664238 (+) 573 WP_003246088.1 signal peptidase I -
  NYE22_RS09045 (NYE22_09045) tasA 1664303..1665088 (+) 786 WP_014477324.1 biofilm matrix protein TasA -
  NYE22_RS09050 (NYE22_09050) sinR 1665180..1665515 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NYE22_RS09055 (NYE22_09055) sinI 1665549..1665722 (-) 174 WP_014477323.1 anti-repressor SinI family protein Regulator

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16164.76 Da        Isoelectric Point: 9.6750

>NTDB_id=981713 NYE22_RS09005 WP_032726159.1 1660485..1660916(+) (comGD) [Bacillus sp. FSL K6-1560]
MNIKLNEEEGFTLLESLLVLSLASILLIAVFTTLPPAYDNIAVRQAARQLKNDIMLTQQAAISRQQRTKIFFHKKEYQLV
IGDTVIERPYARGLSIELLTLKDRLEFNEKGHPNAGGKIRVIGHDAYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=981713 NYE22_RS09005 WP_032726159.1 1660485..1660916(+) (comGD) [Bacillus sp. FSL K6-1560]
TTGAACATTAAATTAAACGAGGAGGAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTACT
GATTGCCGTCTTCACCACACTTCCTCCTGCTTATGACAATATAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGGCTGCTATTTCCCGTCAACAAAGAACAAAAATTTTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAAGGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAATAGGCCATGACGCTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

93.007

100

0.93

Multiple sequence alignment