Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NYE22_RS08545 Genome accession   NZ_CP151946
Coordinates   1578085..1578702 (+) Length   205 a.a.
NCBI ID   WP_032726193.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1560     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1573085..1583702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE22_RS08510 (NYE22_08510) aroE 1573743..1574585 (+) 843 WP_014480317.1 shikimate dehydrogenase -
  NYE22_RS08515 (NYE22_08515) yhbY 1574579..1574869 (+) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  NYE22_RS08520 (NYE22_08520) - 1574881..1575450 (+) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  NYE22_RS08525 (NYE22_08525) yqeK 1575440..1576000 (+) 561 WP_014480316.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NYE22_RS08530 (NYE22_08530) rsfS 1576018..1576374 (+) 357 WP_014477391.1 ribosome silencing factor -
  NYE22_RS08535 (NYE22_08535) - 1576371..1577114 (+) 744 WP_032726197.1 class I SAM-dependent methyltransferase -
  NYE22_RS08540 (NYE22_08540) comER 1577180..1578001 (-) 822 WP_032726195.1 late competence protein ComER -
  NYE22_RS08545 (NYE22_08545) comEA 1578085..1578702 (+) 618 WP_032726193.1 competence protein ComEA Machinery gene
  NYE22_RS08550 (NYE22_08550) - 1578769..1579338 (+) 570 WP_003229978.1 ComE operon protein 2 -
  NYE22_RS08555 (NYE22_08555) - 1579342..1581674 (+) 2333 Protein_1652 DNA internalization-related competence protein ComEC/Rec2 -
  NYE22_RS08560 (NYE22_08560) - 1581714..1581848 (-) 135 WP_003229983.1 YqzM family protein -
  NYE22_RS08565 (NYE22_08565) - 1581889..1582038 (+) 150 WP_003229985.1 hypothetical protein -
  NYE22_RS08570 (NYE22_08570) holA 1582078..1583121 (+) 1044 WP_029317888.1 DNA polymerase III subunit delta -
  NYE22_RS08575 (NYE22_08575) rpsT 1583136..1583402 (-) 267 WP_003229989.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21753.50 Da        Isoelectric Point: 4.8417

>NTDB_id=981707 NYE22_RS08545 WP_032726193.1 1578085..1578702(+) (comEA) [Bacillus sp. FSL K6-1560]
MNWLNQHKKAIVLAASAAVFTAIMIFLATGKNKEPVKQAVPTEAENTVVKQEANNDESSETIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTKEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGGGGSVQSDGGKGALVNINTATLEELQGISGV
GPSKAEAIIAYREENGRFQTIEEITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=981707 NYE22_RS08545 WP_032726193.1 1578085..1578702(+) (comEA) [Bacillus sp. FSL K6-1560]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTGTTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT
GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGGCAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACGAGTCAAGCGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCAGGCGTTTATGAAATGCGTACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCAGGCGGGACCAAAGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA
GATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTGGCGGAGGGTCTG
TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGGGCGTTTCCAAACAATTGAAGAAATCACTAAGGT
TTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(63-118)

Helix-hairpin-helix motif (HHH_3)

(142-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

97.561

100

0.976
  comEA Staphylococcus aureus MW2

35.909

100

0.385
  comEA Staphylococcus aureus N315

35

100

0.376

Multiple sequence alignment