Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ACNM7T_RS13435 Genome accession   NZ_CP183041
Coordinates   2730861..2731556 (-) Length   231 a.a.
NCBI ID   WP_007408165.1    Uniprot ID   A7Z793
Organism   Bacillus amyloliquefaciens strain Scm     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2725861..2736556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNM7T_RS13405 (ACNM7T_13405) - 2725877..2726680 (-) 804 WP_007408168.1 M23 family metallopeptidase -
  ACNM7T_RS13410 (ACNM7T_13410) minD 2726808..2727611 (-) 804 WP_003152655.1 septum site-determining protein MinD -
  ACNM7T_RS13415 (ACNM7T_13415) minC 2727614..2728294 (-) 681 WP_003152653.1 septum site-determining protein MinC -
  ACNM7T_RS13420 (ACNM7T_13420) mreD 2728347..2728865 (-) 519 WP_007408167.1 rod shape-determining protein MreD -
  ACNM7T_RS13425 (ACNM7T_13425) mreC 2728862..2729725 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  ACNM7T_RS13430 (ACNM7T_13430) mreB 2729756..2730769 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  ACNM7T_RS13435 (ACNM7T_13435) ysxA/radC 2730861..2731556 (-) 696 WP_007408165.1 RadC family protein Machinery gene
  ACNM7T_RS13440 (ACNM7T_13440) - 2731588..2732157 (-) 570 WP_007408164.1 Maf family protein -
  ACNM7T_RS13445 (ACNM7T_13445) - 2732298..2733299 (-) 1002 WP_012118106.1 SPOR domain-containing protein -
  ACNM7T_RS13450 (ACNM7T_13450) comC 2733426..2734178 (-) 753 WP_033574185.1 prepilin peptidase Machinery gene
  ACNM7T_RS13455 (ACNM7T_13455) - 2734318..2735610 (-) 1293 WP_033574186.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26080.30 Da        Isoelectric Point: 9.1909

>NTDB_id=981602 ACNM7T_RS13435 WP_007408165.1 2730861..2731556(-) (ysxA/radC) [Bacillus amyloliquefaciens strain Scm]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=981602 ACNM7T_RS13435 WP_007408165.1 2730861..2731556(-) (ysxA/radC) [Bacillus amyloliquefaciens strain Scm]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGACTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGCACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGTGTTCACAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z793

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

87.879

100

0.879
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429

Multiple sequence alignment