Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   NYE38_RS12145 Genome accession   NZ_CP151944
Coordinates   2481287..2481664 (-) Length   125 a.a.
NCBI ID   WP_017418138.1    Uniprot ID   -
Organism   Bacillus sp. EU63     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2476287..2486664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE38_RS12105 (NYE38_12105) - 2476784..2477578 (+) 795 WP_014305407.1 YqhG family protein -
  NYE38_RS12110 (NYE38_12110) sinI 2477755..2477928 (+) 174 WP_014418369.1 anti-repressor SinI family protein Regulator
  NYE38_RS12115 (NYE38_12115) sinR 2477962..2478297 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  NYE38_RS12120 (NYE38_12120) - 2478345..2479130 (-) 786 WP_017418136.1 TasA family protein -
  NYE38_RS12125 (NYE38_12125) - 2479195..2479779 (-) 585 WP_012117977.1 signal peptidase I -
  NYE38_RS12130 (NYE38_12130) tapA 2479751..2480422 (-) 672 WP_025649852.1 amyloid fiber anchoring/assembly protein TapA -
  NYE38_RS12135 (NYE38_12135) - 2480681..2481010 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  NYE38_RS12140 (NYE38_12140) - 2481051..2481230 (-) 180 WP_003153093.1 YqzE family protein -
  NYE38_RS12145 (NYE38_12145) comGG 2481287..2481664 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  NYE38_RS12150 (NYE38_12150) comGF 2481665..2482060 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  NYE38_RS12155 (NYE38_12155) comGE 2482074..2482388 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  NYE38_RS12160 (NYE38_12160) comGD 2482372..2482809 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  NYE38_RS12165 (NYE38_12165) comGC 2482799..2483107 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene
  NYE38_RS12170 (NYE38_12170) comGB 2483112..2484149 (-) 1038 WP_014418377.1 competence type IV pilus assembly protein ComGB Machinery gene
  NYE38_RS12175 (NYE38_12175) comGA 2484136..2485206 (-) 1071 WP_012117985.1 competence type IV pilus ATPase ComGA Machinery gene
  NYE38_RS12180 (NYE38_12180) - 2485399..2486349 (-) 951 WP_014418379.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14125.01 Da        Isoelectric Point: 9.7165

>NTDB_id=981604 NYE38_RS12145 WP_017418138.1 2481287..2481664(-) (comGG) [Bacillus sp. EU63]
MYKSDGFIYPAVLFVSAAVLLVISYTSSDFITRKTFAKEAGEYWIGENLLQNGALLSSRHMTQGQKGQTGTQRFPYGTVS
FHITGSDRRETVQVTIQAETTTGTRREAHLLFDQKKKQLIQWTEV

Nucleotide


Download         Length: 378 bp        

>NTDB_id=981604 NYE38_RS12145 WP_017418138.1 2481287..2481664(-) (comGG) [Bacillus sp. EU63]
ATGTACAAATCTGACGGTTTTATATATCCCGCGGTTCTGTTTGTTTCTGCCGCAGTTTTACTTGTCATCAGCTATACTTC
ATCTGATTTCATCACCCGAAAAACATTTGCAAAAGAGGCCGGGGAGTACTGGATCGGAGAGAACCTGCTCCAAAACGGCG
CGCTGCTGTCAAGCCGCCATATGACACAGGGACAAAAGGGCCAAACTGGTACACAGCGTTTTCCGTACGGCACCGTTTCT
TTTCACATCACCGGGAGTGATCGAAGGGAAACGGTTCAGGTTACAATTCAGGCGGAAACCACGACAGGCACGAGACGGGA
GGCTCACCTTTTGTTCGATCAGAAGAAGAAACAGCTGATTCAATGGACGGAAGTATAA

Domains

Predicted by InterproScan.

ComG operon protein 7 (ComGG)

(30-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Bacillus subtilis subsp. subtilis str. 168

51.613

99.2

0.512

Multiple sequence alignment