Detailed information NTG0981604

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: ACNM7T_RS13530
• Genome accession: NZ_CP183041
• Coordinates: 2753966..2755228 (-)
• Length: 420 a.a.
• NCBI ID: WP_007408149.1
• Uniprot ID: A7Z7B2
• Organism: Bacillus amyloliquefaciens strain Scm
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2748966..2760228

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNM7T_RS13515 (ACNM7T_13515)	yihA	2749050..2749637 (-)	588	WP_003152626.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
ACNM7T_RS13520 (ACNM7T_13520)	lon	2749634..2751958 (-)	2325	WP_052827698.1	endopeptidase La	-
ACNM7T_RS13525 (ACNM7T_13525)	lonB	2752157..2753815 (-)	1659	WP_025285062.1	ATP-dependent protease LonB	-
ACNM7T_RS13530 (ACNM7T_13530)	clpX	2753966..2755228 (-)	1263	WP_007408149.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
ACNM7T_RS13535 (ACNM7T_13535)	tig	2755500..2756774 (-)	1275	WP_003152618.1	trigger factor	-
ACNM7T_RS13540 (ACNM7T_13540)	ddcA	2756991..2757995 (-)	1005	WP_012118117.1	DNA damage checkpoint antagonist DdcA	-
ACNM7T_RS13545 (ACNM7T_13545)	leuD	2758113..2758712 (-)	600	WP_007408146.1	3-isopropylmalate dehydratase small subunit	-
ACNM7T_RS13550 (ACNM7T_13550)	leuC	2758728..2760146 (-)	1419	WP_003152606.1	3-isopropylmalate dehydratase large subunit	-

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 46247.01 Da
• Isoelectric Point: 4.4911

>NTDB_id=981604 ACNM7T_RS13530 WP_007408149.1 2753966..2755228(-) (clpX) [Bacillus amyloliquefaciens strain Scm]
MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQ
AKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
LFICGGAFDGIEQIIKRRLGQKVIGFGSDNKAADLEKEELLSKVLPEDLLRFGLIPEFIGRLPVIASLEQLDETALVEIL
TKPKNALVKQYKKMLELDDVELEFEDEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADG
EAPRLVLKDGTVVGQDKTSA

Nucleotide

• Length: 1263 bp

>NTDB_id=981604 ACNM7T_RS13530 WP_007408149.1 2753966..2755228(-) (clpX) [Bacillus amyloliquefaciens strain Scm]
ATGTTTAAATTCAACGAGGAAAAAGGACAATTGAAATGCTCGTTCTGCGGAAAAACGCAAGATCAGGTTCGTAAGCTGGT
TGCAGGACCGGGTGTATATATATGCGACGAATGTATTGAGCTCTGTACAGAAATCGTAGAGGAAGAGCTTGGTACAGAAG
AAGAAGTCGAATTTAAAGACGTTCCGAAGCCGCAGGAAATCCGTGAGATTCTGAATGAATATGTCATCGGACAGGATCAG
GCGAAGAAATCACTTGCGGTTGCGGTATACAACCATTACAAACGCATCAATTCCAACAGTAAAGTGGATGATGTCGAGCT
TTCTAAAAGTAATATTTCTTTAATCGGACCGACTGGAAGCGGGAAAACACTTCTTGCCCAGACGCTTGCGCGTATTCTGA
ACGTGCCGTTTGCGATCGCGGACGCTACATCTCTGACTGAAGCCGGATATGTCGGTGAGGACGTGGAAAACATCCTCCTC
AAGCTGATTCAGGCAGCAGACTATGATGTGGAAAAAGCAGAAAAAGGCATTATTTATATCGATGAAATCGATAAAGTAGC
GCGAAAATCTGAAAACCCGTCCATTACACGCGACGTATCAGGCGAAGGCGTTCAGCAGGCGCTGCTGAAAATTCTTGAAG
GAACGGTTGCAAGCGTGCCGCCTCAAGGAGGACGCAAACATCCTCATCAGGAATTCATCCAGATCGATACGACGAACATC
CTGTTCATTTGCGGCGGTGCATTTGACGGCATCGAACAAATCATCAAACGCCGTCTCGGACAAAAAGTCATCGGCTTCGG
CTCTGATAATAAAGCGGCAGACCTGGAAAAAGAAGAACTGCTTTCTAAAGTTCTTCCTGAAGACTTGCTCCGTTTCGGTC
TGATTCCTGAATTCATCGGCCGTCTTCCTGTCATTGCAAGCCTTGAGCAGCTTGACGAAACGGCACTGGTTGAAATTCTG
ACTAAACCGAAAAACGCACTCGTCAAACAATACAAGAAAATGTTAGAACTTGATGATGTCGAGCTTGAATTTGAAGACGA
GGCATTATCTGAAATTGCGAAAAAAGCGATCGAGCGTAAAACAGGCGCACGCGGCCTGCGTTCTATCATTGAAGGCATCA
TGCTTGACGTCATGTTTGATCTGCCGTCCCGCGATGATATTGAAAAATGTGTCATTACCGGAGCGACAGTCGCAGACGGT
GAAGCACCGCGTCTTGTATTAAAAGACGGCACAGTTGTCGGCCAAGATAAAACATCAGCATAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (109-305)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-389)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

3D structure

• AlphaFold DB: A7Z7B2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	68.262	94.524	0.645
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.158	96.19	0.569