Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AAFX31_RS14110 Genome accession   NZ_CP151941
Coordinates   1278678..1279310 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio chagasii strain TBV018     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1273678..1284310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX31_RS14090 (AAFX31_14100) - 1275427..1275897 (+) 471 WP_061033632.1 TIGR02444 family protein -
  AAFX31_RS14095 (AAFX31_14105) - 1276169..1277149 (+) 981 WP_061033631.1 hydrolase -
  AAFX31_RS14100 (AAFX31_14110) - 1277278..1277490 (+) 213 WP_004737179.1 YheU family protein -
  AAFX31_RS14105 (AAFX31_14115) - 1277568..1278437 (+) 870 WP_008222326.1 phosphoribulokinase -
  AAFX31_RS14110 (AAFX31_14120) crp 1278678..1279310 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  AAFX31_RS14115 (AAFX31_14125) - 1279375..1280568 (-) 1194 WP_411061630.1 ISL3 family transposase -
  AAFX31_RS14120 (AAFX31_14130) - 1280738..1281529 (-) 792 WP_411062183.1 DUF1338 domain-containing protein -
  AAFX31_RS14125 (AAFX31_14135) astD 1281745..1283202 (-) 1458 WP_016796009.1 succinylglutamate-semialdehyde dehydrogenase -
  AAFX31_RS14130 (AAFX31_14140) astA 1283241..1284260 (-) 1020 WP_411062184.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=981408 AAFX31_RS14110 WP_004410522.1 1278678..1279310(+) (crp) [Vibrio chagasii strain TBV018]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=981408 AAFX31_RS14110 WP_004410522.1 1278678..1279310(+) (crp) [Vibrio chagasii strain TBV018]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTAGGCTTGTTCGAAGAAGAC
CAAGAGCGTACTGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGACATCCTAATGCGTCTTTCAGCGCAAATGGCAAGCCGCCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTAAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAAATCGTTGGTTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment