Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACLM40_RS09870 Genome accession   NZ_CP182859
Coordinates   2082095..2084176 (-) Length   693 a.a.
NCBI ID   WP_005613379.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain APPFJLYC01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2077095..2089176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLM40_RS09855 (ACLM40_09855) menB 2078893..2079750 (-) 858 WP_005599432.1 1,4-dihydroxy-2-naphthoyl-CoA synthase -
  ACLM40_RS09860 (ACLM40_09860) - 2079885..2081591 (-) 1707 WP_237593408.1 RelA/SpoT family protein -
  ACLM40_RS09865 (ACLM40_09865) rpoZ 2081687..2081968 (-) 282 WP_005613378.1 DNA-directed RNA polymerase subunit omega -
  ACLM40_RS09870 (ACLM40_09870) recG 2082095..2084176 (-) 2082 WP_005613379.1 ATP-dependent DNA helicase RecG Machinery gene
  ACLM40_RS09875 (ACLM40_09875) - 2084300..2084728 (-) 429 WP_005609264.1 type II toxin-antitoxin system VapC family toxin -
  ACLM40_RS09880 (ACLM40_09880) - 2084728..2085015 (-) 288 WP_005599447.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  ACLM40_RS09885 (ACLM40_09885) proS 2085221..2086936 (+) 1716 WP_418146194.1 proline--tRNA ligase -
  ACLM40_RS09890 (ACLM40_09890) - 2087002..2087190 (-) 189 WP_005602684.1 hypothetical protein -
  ACLM40_RS09895 (ACLM40_09895) - 2087193..2087774 (-) 582 WP_005599450.1 sigma-70 family RNA polymerase sigma factor -
  ACLM40_RS09900 (ACLM40_09900) msrP 2087863..2088819 (+) 957 WP_005619040.1 protein-methionine-sulfoxide reductase catalytic subunit MsrP -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77126.04 Da        Isoelectric Point: 7.9002

>NTDB_id=981353 ACLM40_RS09870 WP_005613379.1 2082095..2084176(-) (recG) [Actinobacillus pleuropneumoniae strain APPFJLYC01]
MSEQLLDGVPLTALSGVGAAIAEKLSRIGINNVQDLLFHLPYRYEDRTRITPIIDVRPESFSTIEGIVQVTEVQFGRRPI
LSTVLSDGTSKITLKFFNFNAGMKNSLTAGTRVKAFGEIKRGRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQ
NSLRKLTEQALALLDKIKVGELLPDEYNPHKYSLKEALQLLHRPPPDISAEQLEKGEHPAQKRLIFEELLAHNLAMQQVR
VGVNQLTATPLCYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGKARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQH
RFGVHQRLTLREKGAKDGIYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAACK
NEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAEFKAANIDLLVATTVIEVGVDVP
NASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLYKPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQ
TGMAEFKVANLMRDRKMIPLVQNYAKQIIQQNPPLAEALIHRWLGERTEYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=981353 ACLM40_RS09870 WP_005613379.1 2082095..2084176(-) (recG) [Actinobacillus pleuropneumoniae strain APPFJLYC01]
ATGAGCGAACAATTACTAGACGGTGTGCCACTTACCGCCCTTTCCGGGGTGGGTGCGGCGATTGCGGAAAAACTTAGCCG
AATCGGCATTAATAACGTACAAGATCTATTATTTCATTTGCCTTATCGCTATGAAGATCGCACCCGAATTACGCCGATTA
TCGATGTGCGTCCGGAAAGTTTTTCTACCATCGAAGGTATCGTGCAAGTTACCGAAGTACAATTCGGTCGCCGTCCGATT
TTATCCACCGTGCTTTCTGACGGCACCAGTAAAATTACGCTGAAATTCTTTAATTTTAATGCGGGGATGAAAAACAGCCT
GACTGCCGGCACACGTGTAAAAGCTTTTGGCGAAATCAAACGCGGACGTTTTATGGCGGAAATTCATCACCCCGAATATC
AAATTATTCGCAATAATCAACCGCTTGAACTTGCCGAAACGTTAACGCCGATTTACTCCACAACAGAAGGTTTAAAGCAA
AATTCGTTACGTAAGCTCACCGAGCAAGCATTAGCGTTATTAGATAAAATCAAAGTCGGTGAACTGTTGCCGGACGAATA
CAATCCGCATAAATACAGCTTAAAAGAAGCGTTGCAATTATTACACCGCCCGCCGCCGGATATTTCTGCCGAACAGTTGG
AAAAAGGTGAGCATCCGGCACAAAAACGGCTGATTTTTGAAGAATTACTGGCGCACAACTTAGCAATGCAGCAAGTACGA
GTCGGAGTCAATCAGCTTACTGCTACACCGCTATGTTATCAAACCGATCTCAAAAGTCGCTTTTTGGCGAGCTTGCCGTT
TAAACCGACCAACGCCCAAAGCCGGGTGACAGCGGATATCGAGCAAGATTTAGCCAAATCCTCACCAATGATGCGATTAG
TACAAGGCGATGTCGGATCGGGCAAAACTTTAGTTGCTGCGCTTGCCGCCCTGCTTGCGATTGATAACGGCAAACAAGTG
GCATTAATGGCACCGACTGAAATCCTTGCCGAGCAGCACGCCAATAACTTTGCAAACTGGCTACGCCCGTTCGGTATTGA
AGTCGGCTGGCTTGCCGGTAAAGTCAAAGGTAAAGCTCGCACCGCACAACTGGAAGCGATTAAAAACGGCGAAGTGCAGA
TGATTATCGGCACACACGCACTCTTCCAAGAAAGCGTCGAGTTTCATAACCTCGCATTAGTGATTATTGATGAACAACAC
CGTTTTGGTGTACACCAACGCTTAACCCTACGTGAAAAAGGGGCGAAAGACGGTATTTATCCGCACCAGCTAATTATGAC
TGCTACGCCAATTCCTCGTACCTTAGCAATGACGGTCTATGCCGATCTGGATACCTCTATTATTGACGAGCTACCACCGG
GGCGAACGCCGATTACTACCGTGGCGATTTCGGAAGACAGACGAGATGAAATTGTGCGTCGTGTGTATGCCGCCTGCAAA
AACGAAAAACGCCAAGCCTATTGGGTTTGTACCCTAATTGATGAATCGGAAGTCTTGGAAGCACAAGCTGCGGCGGCGAT
TGCCGAAGATTTACAACGAGCCTTACCGGATTTACGCATCGGCTTGGTACACGGACGAATGAAGCCGCAAGAAAAGCAAG
AAATTATGGCGGAATTTAAAGCGGCGAATATCGATTTATTGGTTGCCACCACAGTGATTGAAGTGGGGGTTGATGTGCCG
AATGCCAGCCTAATGATTATCGAAAACTCCGAACGTTTAGGGCTTGCTCAACTCCATCAATTACGTGGACGTGTCGGACG
TGGTGCAACCGCTTCCCATTGCGTGTTGCTGTATAAACCGCCGCTCGGCAAAATCTCGAGTAAACGCTTACAAGTGTTAC
GTGACAGCCAAGACGGTTTCTATATTGCCGAAAAAGATTTGGAAATTCGTGGCACGGGCGAGATTCTCGGCACGAAGCAA
ACCGGTATGGCGGAATTTAAAGTAGCGAATTTAATGCGAGATCGCAAAATGATTCCGTTGGTACAAAACTATGCCAAGCA
AATTATTCAGCAAAATCCACCGCTTGCAGAAGCGCTGATTCACCGCTGGCTTGGCGAGCGTACCGAATATAGTAATGCCT
AA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(476-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

DEAD/DEAH box helicase (DEAD)

(292-407)

RecG wedge domain (RecG_wedge)

(15-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.481

97.403

0.482
  recG Bacillus subtilis subsp. subtilis str. 168

38.996

97.691

0.381
  recG/mmsA Streptococcus pneumoniae R6

38.931

94.517

0.368
  recG/mmsA Streptococcus pneumoniae R36A

38.931

94.517

0.368

Multiple sequence alignment