Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   AAFX34_RS10035 Genome accession   NZ_CP151937
Coordinates   538976..539623 (-) Length   215 a.a.
NCBI ID   WP_011079388.1    Uniprot ID   Q7MHB7
Organism   Vibrio vulnificus strain TBV029     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 533976..544623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX34_RS10025 (AAFX34_10015) uvrA 534954..537776 (-) 2823 WP_061058940.1 excinuclease ABC subunit UvrA -
  AAFX34_RS10030 (AAFX34_10020) galU 537918..538790 (-) 873 WP_011079387.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AAFX34_RS10035 (AAFX34_10025) qstR 538976..539623 (-) 648 WP_011079388.1 response regulator transcription factor Regulator
  AAFX34_RS10040 (AAFX34_10030) ssb 539923..540462 (+) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  AAFX34_RS10045 (AAFX34_10035) csrD 540615..542612 (+) 1998 WP_043877331.1 RNase E specificity factor CsrD -
  AAFX34_RS10050 (AAFX34_10040) - 542625..544085 (+) 1461 WP_013571058.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24673.63 Da        Isoelectric Point: 9.8565

>NTDB_id=981311 AAFX34_RS10035 WP_011079388.1 538976..539623(-) (qstR) [Vibrio vulnificus strain TBV029]
MRKSSYARKPFFISLQNEQTPEFVTVLAKQIQMEIPVITPATLMQADPNHRNRILLIDHQQHKVLLREIKNLPLIWKGFE
TVLCNVPSRLTTEELIGFGQCKAIFYRDTAITDMAKGLNSVINGKSWLPRDVSAQLIHYYRNMVCSHTSPVNVDLTMREI
QVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWADQNLIS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=981311 AAFX34_RS10035 WP_011079388.1 538976..539623(-) (qstR) [Vibrio vulnificus strain TBV029]
ATGAGAAAATCTTCTTACGCGCGGAAGCCATTTTTTATCAGTTTGCAAAACGAACAAACTCCTGAGTTCGTCACGGTATT
AGCTAAACAGATTCAAATGGAGATCCCTGTGATTACCCCGGCAACGCTCATGCAAGCTGATCCCAATCATCGTAATCGCA
TCTTATTAATTGATCATCAGCAACATAAGGTGCTGTTGAGAGAAATTAAAAACCTACCCCTGATATGGAAAGGGTTTGAA
ACGGTCCTGTGTAATGTACCTAGCCGATTGACGACTGAGGAACTGATCGGTTTTGGCCAGTGCAAAGCGATCTTCTACCG
AGACACCGCCATTACAGACATGGCCAAAGGACTAAATTCGGTGATTAATGGCAAAAGCTGGCTGCCACGCGACGTCAGTG
CACAACTCATCCACTACTATCGAAATATGGTTTGTTCACACACTTCACCAGTGAATGTGGATCTCACGATGAGAGAAATT
CAAGTGTTACGCTGCGTGCAGTCTGGCAAGTCAAATTCTCAAATCGCCGAAGATCTTTTCATTAGTGAATTCACCGTAAA
GTCGCATCTCTATCAAACCTTTAGAAAGCTCTCCGTGAAGAATCGTGTCCAAGCTGCCGCGTGGGCTGACCAAAATTTGA
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

60.93

100

0.609
  qstR Vibrio campbellii strain DS40M4

60.93

100

0.609
  qstR Vibrio cholerae strain A1552

47.196

99.535

0.47

Multiple sequence alignment