Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AAFX34_RS09345 Genome accession   NZ_CP151937
Coordinates   380874..381506 (-) Length   210 a.a.
NCBI ID   WP_011079297.1    Uniprot ID   -
Organism   Vibrio vulnificus strain TBV029     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 375874..386506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX34_RS09330 (AAFX34_09320) astA 377252..378271 (+) 1020 WP_411132472.1 arginine N-succinyltransferase -
  AAFX34_RS09335 (AAFX34_09325) astD 378289..379746 (+) 1458 WP_039450023.1 succinylglutamate-semialdehyde dehydrogenase -
  AAFX34_RS09340 (AAFX34_09330) - 379958..380749 (+) 792 WP_053543215.1 DUF1338 domain-containing protein -
  AAFX34_RS09345 (AAFX34_09335) crp 380874..381506 (-) 633 WP_011079297.1 cAMP-activated global transcriptional regulator CRP Regulator
  AAFX34_RS09350 (AAFX34_09340) - 381749..382618 (-) 870 WP_225458286.1 phosphoribulokinase -
  AAFX34_RS09355 (AAFX34_09345) - 382747..382959 (-) 213 WP_011079299.1 YheU family protein -
  AAFX34_RS09360 (AAFX34_09350) - 383015..383992 (-) 978 WP_411132473.1 hydrolase -
  AAFX34_RS09365 (AAFX34_09355) - 384138..384617 (-) 480 WP_045591786.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23538.33 Da        Isoelectric Point: 7.8387

>NTDB_id=981304 AAFX34_RS09345 WP_011079297.1 380874..381506(-) (crp) [Vibrio vulnificus strain TBV029]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=981304 AAFX34_RS09345 WP_011079297.1 380874..381506(-) (crp) [Vibrio vulnificus strain TBV029]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTAATTCATGCGGGCGAAAAAGCAGAAACACTTTACTACATCGTAAAAGGTTCTGTTGCGGTACTGATTAAGG
ATGAAGAAGGTAAAGAAATGATCCTTTCTTACCTAAATCAAGGTGACTTTATTGGTGAACTAGGCCTGTTTGAAGAAGGC
CAAGAGCGTACCGCTTGGGTTCGCGCAAAATCTCCTTGTGAAGTCGCGGAAATCTCATTCAAGAAATTCCGTCAGCTAAT
TCAGGTAAACCCTGACATCCTGATGCGTCTATCTGCTCAGATGGCAAGCCGTCTGCAAGTGACCAGCCAAAAAGTGGGTG
ACTTGGCATTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTATTGAATCTTGCTAAACAACCAGATGCGATGACACAC
CCAGATGGCATGCAGATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTCGAAGAGCAAAACCTGATTTCTGCACACGGCAAAACTATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment