Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AAGA51_RS01295 Genome accession   NZ_CP151842
Coordinates   287117..287749 (-) Length   210 a.a.
NCBI ID   WP_004728582.1    Uniprot ID   A0A7X4LI26
Organism   Vibrio diazotrophicus strain ATCC 33466     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 282117..292749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGA51_RS01275 - 282266..283477 (+) 1212 WP_042485119.1 aspartate aminotransferase family protein -
  AAGA51_RS01280 astA 283563..284582 (+) 1020 WP_042485122.1 arginine N-succinyltransferase -
  AAGA51_RS01285 astD 284603..286060 (+) 1458 WP_042485125.1 succinylglutamate-semialdehyde dehydrogenase -
  AAGA51_RS01290 - 286211..287014 (+) 804 WP_042485128.1 DUF1338 domain-containing protein -
  AAGA51_RS01295 crp 287117..287749 (-) 633 WP_004728582.1 cAMP-activated global transcriptional regulator CRP Regulator
  AAGA51_RS01300 - 287990..288859 (-) 870 WP_042485131.1 phosphoribulokinase -
  AAGA51_RS01305 - 288955..289164 (-) 210 WP_042485134.1 YheU family protein -
  AAGA51_RS01310 - 289258..290238 (-) 981 WP_042485137.1 hydrolase -
  AAGA51_RS01315 - 290358..290828 (-) 471 WP_042485140.1 TIGR02444 family protein -
  AAGA51_RS01320 - 290825..292747 (-) 1923 WP_042485143.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23593.41 Da        Isoelectric Point: 8.2772

>NTDB_id=981077 AAGA51_RS01295 WP_004728582.1 287117..287749(-) (crp) [Vibrio diazotrophicus strain ATCC 33466]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=981077 AAGA51_RS01295 WP_004728582.1 287117..287749(-) (crp) [Vibrio diazotrophicus strain ATCC 33466]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCTTCAAA
AAGCACGCTGATTCACGCGGGCGAGAAAGCAGAAACTTTGTACTACATTGTTAAAGGTTCTGTTGCGGTACTGATTAAAG
ATGAAGAAGGAAAGGAAATGATCCTTTCTTACCTAAACCAAGGTGACTTCATCGGTGAACTTGGCTTGTTTGAAGAAGGT
CAAGAGCGTACAGCATGGGTTCGAGCTAAATCTCCATGTGAAGTTGCTGAAATTTCATTTAAGAAGTTCCGTCAGCTTAT
CCAAGTTAACCCAGATATTTTAATGCGTCTTTCTGGTCAGATGGCTCGTCGTCTACAAGTAACAAGCCAGAAAGTTGGTG
ACCTTGCGTTCCTAGACGTAACAGGCCGCATTGCACAAACGCTTCTTAACCTAGCGAAACAGCCTGACGCAATGACTCAC
CCAGACGGCATGCAGATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
TCTGAAGATGCTTGAAGAGCAGAATCTAATTTCAGCTCACGGTAAGACTATCGTTGTGTACGGAACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4LI26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.048

100

0.99
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment