Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   WLF14_RS18960 Genome accession   NZ_CP151816
Coordinates   4191533..4193746 (-) Length   737 a.a.
NCBI ID   WP_342309910.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain IMGN2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4186533..4198746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WLF14_RS18925 (WLF14_18925) murB 4186902..4187921 (-) 1020 WP_102625486.1 UDP-N-acetylmuramate dehydrogenase -
  WLF14_RS18930 (WLF14_18930) - 4187918..4188382 (-) 465 WP_102625485.1 low molecular weight protein-tyrosine-phosphatase -
  WLF14_RS18935 (WLF14_18935) kdsB 4188382..4189146 (-) 765 WP_024076129.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  WLF14_RS18940 (WLF14_18940) - 4189143..4189328 (-) 186 WP_003174668.1 Trm112 family protein -
  WLF14_RS18945 (WLF14_18945) lpxK 4189353..4190363 (-) 1011 WP_102625484.1 tetraacyldisaccharide 4'-kinase -
  WLF14_RS18950 (WLF14_18950) - 4190363..4190791 (-) 429 WP_102625483.1 biopolymer transporter ExbD -
  WLF14_RS18955 (WLF14_18955) exbB 4190788..4191423 (-) 636 WP_024076132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  WLF14_RS18960 (WLF14_18960) comA 4191533..4193746 (-) 2214 WP_342309910.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  WLF14_RS18965 (WLF14_18965) - 4193894..4194409 (+) 516 WP_024076134.1 DUF2062 domain-containing protein -
  WLF14_RS18970 (WLF14_18970) - 4194406..4195782 (-) 1377 WP_102625481.1 sensor histidine kinase -
  WLF14_RS18975 (WLF14_18975) - 4195769..4196497 (-) 729 WP_102625480.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79848.76 Da        Isoelectric Point: 10.6361

>NTDB_id=981002 WLF14_RS18960 WP_342309910.1 4191533..4193746(-) (comA) [Pseudomonas fluorescens strain IMGN2]
MFALALGLLALRFLPALPPAAGVLAMCVLALMLLPFRSHPLAFFLLGLSWACISAQWALDDRLQPALDGQTRWVEGRVTG
LPQQTSTGVRFELTDGRSPKARLPKRIRVAWHGGPPVRSGERWRLAVTLKRPSGVLNFHGFDHEAWLLAQRIGATGSVKD
GERLAPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLAAEDWRVLQDTGTVHLLVISGQHIGLLAGLIYGLVTLL
ARYGCWPPAWPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRMRFRHLGAWWPLLLAFNGVLILEPLASLQ
PGFWLSFAAVAVLVLAFGGRLGRWSAWQAWTRPQWLIAIGLFPLLLVLGLPISLSAPLANLFAVPWISLVVLPLALLGTV
LVAVPFVGEGLLWLAGGALDGLFRALALLAGHLPAWIPAEVPMGYWLVSVAGAVLLLLPRGVPLRPLGWPMLLLAVFPPR
EPVPHGQVEVVQLDVGQGQALVLRTRHHTLLYDAGPRSGEVDLGARVVLPSLRKLGVEVLDMMLLSHADADHAGGAAAIA
RGLPIRRVVGGETRGLPAFLGTEPCVSGEQWEWDGVSFELWQWPDAISGNPKSCVLQVQAKGERMLLTGDIDRAAERAFL
ASPLAVRTDWLQAPHHGSRSSSSWPFVQRLAPTAVLISRGRGNAFGHPHPQVMERYRALGTQVYDSAEQGAVRVQLGAFL
PPTVARSQRRFWREALP

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=981002 WLF14_RS18960 WP_342309910.1 4191533..4193746(-) (comA) [Pseudomonas fluorescens strain IMGN2]
ATGTTCGCGCTCGCGCTGGGGCTGCTCGCCTTGCGTTTTTTACCCGCGTTGCCGCCTGCCGCGGGGGTGTTGGCCATGTG
CGTGCTGGCGTTGATGCTGCTGCCGTTTCGCAGCCACCCACTGGCGTTCTTTCTGCTGGGCTTGAGTTGGGCGTGCATCA
GCGCGCAGTGGGCGCTGGATGACCGCCTGCAACCGGCCCTCGATGGCCAGACGCGCTGGGTGGAGGGCCGGGTGACCGGG
TTGCCGCAGCAGACCAGCACGGGCGTGCGTTTCGAACTGACCGACGGCCGGTCCCCCAAGGCGCGTTTACCCAAGCGTAT
TCGCGTGGCCTGGCATGGCGGGCCACCGGTGCGCAGTGGGGAGCGCTGGCGCTTGGCCGTGACGCTCAAGCGGCCATCCG
GCGTGCTCAACTTCCATGGCTTTGATCATGAGGCCTGGCTGTTGGCCCAGCGCATCGGTGCCACCGGCTCGGTGAAAGAT
GGTGAGCGTTTGGCGCCGGCGCGCAACGCTTGGCGCGACGCGGTCCGCCAACGACTGATGGCTGTGGATGCCCAAGGCCG
CGAGGCCGGGCTGGCCGCCTTGGTGCTGGGCGATGGCTCGGGGCTGGCCGCCGAGGATTGGCGTGTGTTGCAGGACACCG
GTACGGTGCACCTGCTGGTGATATCCGGCCAGCATATTGGCTTGCTGGCGGGGTTGATCTATGGGCTGGTCACACTGCTG
GCGCGCTACGGTTGCTGGCCCCCCGCCTGGCCGTGGCTGCCTTGGGCGTGTGGCCTGGCATTTGCTGCCGCGCTGGGCTA
CGGCCTGCTGGCGGGGTTTGGAGTGCCGGTGCAAAGGGCCTGCGTGATGGTGGGGCTGGTATTGCTGTGGCGTATGCGTT
TTCGCCATTTGGGCGCCTGGTGGCCATTGTTACTGGCATTTAATGGCGTGCTGATCCTTGAGCCTTTGGCCAGCCTGCAG
CCGGGGTTCTGGTTGTCGTTCGCGGCTGTCGCGGTATTGGTGCTGGCATTCGGTGGGCGTTTGGGGCGGTGGAGCGCCTG
GCAAGCCTGGACCCGTCCCCAGTGGTTGATCGCGATCGGCCTGTTTCCGCTGTTGCTGGTGCTGGGGTTGCCCATCAGTC
TCAGCGCGCCGTTGGCTAACCTGTTTGCCGTGCCATGGATCAGCCTGGTGGTGTTGCCCTTGGCATTGTTGGGCACTGTG
CTGGTGGCGGTGCCCTTTGTGGGGGAGGGGCTGTTATGGCTGGCGGGTGGGGCGCTGGATGGGTTGTTCCGCGCCTTGGC
GCTGCTGGCCGGGCATCTGCCGGCATGGATACCGGCCGAGGTGCCGATGGGCTATTGGCTGGTGAGCGTCGCGGGTGCAG
TGTTACTGCTGTTGCCCAGGGGCGTACCGTTACGACCGCTGGGGTGGCCGATGCTGTTGTTGGCGGTGTTTCCGCCGCGG
GAGCCGGTGCCCCATGGGCAGGTTGAGGTGGTGCAACTGGATGTCGGTCAGGGGCAGGCGCTGGTGCTGCGCACCCGTCA
TCACACCTTGCTCTACGATGCGGGTCCGCGCTCGGGGGAAGTCGATCTTGGCGCGCGTGTGGTATTGCCGTCATTGAGAA
AACTCGGGGTGGAGGTATTGGACATGATGCTGCTCAGCCACGCCGACGCCGACCATGCCGGCGGTGCGGCGGCTATTGCC
CGTGGGCTGCCGATCAGACGGGTAGTCGGAGGCGAAACACGAGGCTTGCCGGCGTTTCTCGGCACTGAACCCTGTGTCAG
CGGTGAACAGTGGGAGTGGGATGGGGTGTCATTTGAACTGTGGCAGTGGCCAGATGCTATTAGTGGTAACCCGAAATCCT
GTGTATTACAGGTCCAGGCCAAGGGTGAGCGCATGTTGCTCACGGGGGATATTGATCGCGCCGCCGAGCGGGCTTTTCTT
GCCTCGCCCTTGGCTGTGCGGACCGATTGGTTGCAGGCGCCCCATCATGGCAGCCGCAGTTCTTCGTCCTGGCCCTTTGT
GCAGCGGCTGGCGCCCACGGCGGTGCTGATTTCCAGGGGGCGAGGCAACGCGTTCGGCCACCCCCACCCCCAGGTGATGG
AACGCTACCGGGCACTGGGTACCCAGGTTTATGACAGTGCTGAACAAGGGGCTGTGCGTGTGCAATTGGGGGCGTTCCTG
CCACCGACTGTTGCGCGCAGTCAACGCCGTTTCTGGCGCGAAGCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-647)

Competence protein (Competence)

(194-460)

Domain of unknown function (DUF4131) (DUF4131)

(16-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.083

97.558

0.586
  comA Ralstonia pseudosolanacearum GMI1000

35.714

100

0.38

Multiple sequence alignment