Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | WLF14_RS04345 | Genome accession | NZ_CP151816 |
| Coordinates | 958469..959335 (-) | Length | 288 a.a. |
| NCBI ID | WP_069075202.1 | Uniprot ID | A0AB36Y547 |
| Organism | Pseudomonas fluorescens strain IMGN2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 953469..964335
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WLF14_RS04305 (WLF14_04305) | - | 953858..955156 (-) | 1299 | WP_168232462.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| WLF14_RS04310 (WLF14_04310) | - | 955217..955390 (-) | 174 | WP_024073379.1 | DUF3094 family protein | - |
| WLF14_RS04315 (WLF14_04315) | - | 955480..956109 (-) | 630 | WP_017845475.1 | DUF1780 domain-containing protein | - |
| WLF14_RS04320 (WLF14_04320) | - | 956210..956677 (+) | 468 | WP_069075203.1 | FAD/FMN-containing dehydrogenase | - |
| WLF14_RS04325 (WLF14_04325) | - | 956674..957363 (+) | 690 | WP_024073381.1 | energy-coupling factor ABC transporter permease | - |
| WLF14_RS04330 (WLF14_04330) | - | 957440..957655 (+) | 216 | WP_003171680.1 | hypothetical protein | - |
| WLF14_RS04335 (WLF14_04335) | yacG | 957652..957852 (-) | 201 | WP_017845472.1 | DNA gyrase inhibitor YacG | - |
| WLF14_RS04340 (WLF14_04340) | coaE | 957849..958472 (-) | 624 | WP_024073382.1 | dephospho-CoA kinase | - |
| WLF14_RS04345 (WLF14_04345) | pilD | 958469..959335 (-) | 867 | WP_069075202.1 | A24 family peptidase | Machinery gene |
| WLF14_RS04350 (WLF14_04350) | pilC | 959332..960540 (-) | 1209 | WP_069075201.1 | type II secretion system F family protein | Machinery gene |
| WLF14_RS04355 (WLF14_04355) | - | 960742..961155 (+) | 414 | WP_024073385.1 | pilin | - |
| WLF14_RS04360 (WLF14_04360) | - | 961190..962599 (+) | 1410 | WP_069075200.1 | O-antigen ligase family protein | - |
| WLF14_RS04370 (WLF14_04370) | - | 962862..963167 (+) | 306 | WP_024073387.1 | DUF6388 family protein | - |
| WLF14_RS04375 (WLF14_04375) | - | 963192..963281 (+) | 90 | Protein_851 | outer membrane lipoprotein carrier protein LolA | - |
| WLF14_RS04380 (WLF14_04380) | nadC | 963289..964137 (-) | 849 | WP_150054127.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 31860.16 Da Isoelectric Point: 7.0716
>NTDB_id=980994 WLF14_RS04345 WP_069075202.1 958469..959335(-) (pilD) [Pseudomonas fluorescens strain IMGN2]
MNLLLTEQPWAFVAVALVLGLIIGSFLNVLVWRLPKMLEREWRAQALEVLGMPADPAGPTYNLMHPNSCCPHCNHPIRPW
ENIPLLSYLMLRGRCAHCQQPISARYPITELACGLISAMVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDILVLP
LLWLGLIINSADLLTALPDALWGAVIGYLSLWTVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVI
VGLILMRLRKAEISAPMPFGPYLAIAGWIAVLWGGQITDFYLQSVGFR
MNLLLTEQPWAFVAVALVLGLIIGSFLNVLVWRLPKMLEREWRAQALEVLGMPADPAGPTYNLMHPNSCCPHCNHPIRPW
ENIPLLSYLMLRGRCAHCQQPISARYPITELACGLISAMVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDILVLP
LLWLGLIINSADLLTALPDALWGAVIGYLSLWTVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVI
VGLILMRLRKAEISAPMPFGPYLAIAGWIAVLWGGQITDFYLQSVGFR
Nucleotide
Download Length: 867 bp
>NTDB_id=980994 WLF14_RS04345 WP_069075202.1 958469..959335(-) (pilD) [Pseudomonas fluorescens strain IMGN2]
TTGAACCTGCTGCTGACTGAGCAGCCATGGGCGTTTGTCGCAGTGGCCCTGGTACTGGGGCTGATCATCGGTAGCTTCCT
CAATGTACTGGTATGGCGCCTGCCGAAAATGCTTGAGCGGGAATGGCGCGCACAAGCCCTTGAAGTGCTCGGCATGCCCG
CCGACCCCGCCGGGCCCACCTACAACCTGATGCACCCCAACTCCTGCTGCCCGCACTGCAATCACCCGATTCGCCCGTGG
GAGAATATCCCGCTGCTCAGCTACCTCATGCTCCGGGGGCGTTGCGCCCATTGTCAGCAGCCGATCAGTGCACGCTACCC
CATCACTGAACTGGCCTGCGGGCTGATCTCGGCCATGGTGGCCTGGCATTTTGGCTTTGGCTGGCAAGCCGGGGCAGTCA
TGTTGTTGAGCTGGGGGCTGCTGGCAATGAGCCTGATCGATGTGGATCACCAACTGCTACCCGATATCCTGGTCCTGCCG
CTGCTGTGGCTGGGGCTGATCATCAACAGCGCCGACCTGCTGACCGCACTGCCGGACGCACTGTGGGGCGCGGTGATCGG
CTACCTAAGTCTGTGGACAGTGTTCTGGCTGTTCAAACTGGTGACCGGCAAGGACGGCATGGGCCATGGTGACTTCAAGT
TATTGGCGCTGCTTGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACGCTACTGATGTCTTCGCTGGTGGGCGTGATC
GTAGGGCTGATTCTGATGCGCTTGCGCAAGGCTGAGATCTCGGCACCGATGCCGTTTGGTCCCTATCTGGCAATTGCCGG
CTGGATTGCCGTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
TTGAACCTGCTGCTGACTGAGCAGCCATGGGCGTTTGTCGCAGTGGCCCTGGTACTGGGGCTGATCATCGGTAGCTTCCT
CAATGTACTGGTATGGCGCCTGCCGAAAATGCTTGAGCGGGAATGGCGCGCACAAGCCCTTGAAGTGCTCGGCATGCCCG
CCGACCCCGCCGGGCCCACCTACAACCTGATGCACCCCAACTCCTGCTGCCCGCACTGCAATCACCCGATTCGCCCGTGG
GAGAATATCCCGCTGCTCAGCTACCTCATGCTCCGGGGGCGTTGCGCCCATTGTCAGCAGCCGATCAGTGCACGCTACCC
CATCACTGAACTGGCCTGCGGGCTGATCTCGGCCATGGTGGCCTGGCATTTTGGCTTTGGCTGGCAAGCCGGGGCAGTCA
TGTTGTTGAGCTGGGGGCTGCTGGCAATGAGCCTGATCGATGTGGATCACCAACTGCTACCCGATATCCTGGTCCTGCCG
CTGCTGTGGCTGGGGCTGATCATCAACAGCGCCGACCTGCTGACCGCACTGCCGGACGCACTGTGGGGCGCGGTGATCGG
CTACCTAAGTCTGTGGACAGTGTTCTGGCTGTTCAAACTGGTGACCGGCAAGGACGGCATGGGCCATGGTGACTTCAAGT
TATTGGCGCTGCTTGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACGCTACTGATGTCTTCGCTGGTGGGCGTGATC
GTAGGGCTGATTCTGATGCGCTTGCGCAAGGCTGAGATCTCGGCACCGATGCCGTTTGGTCCCTATCTGGCAATTGCCGG
CTGGATTGCCGTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.317 |
96.528 |
0.524 |
| pilD | Vibrio campbellii strain DS40M4 |
51.254 |
96.875 |
0.497 |
| pilD | Acinetobacter nosocomialis M2 |
51.282 |
94.792 |
0.486 |
| pilD | Acinetobacter baumannii D1279779 |
51.282 |
94.792 |
0.486 |
| pilD | Neisseria gonorrhoeae MS11 |
49.259 |
93.75 |
0.462 |